Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ccdc9Q8VC31 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Ccdc9Q8VC31 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC21.78■■□□□ 1.08
Ccdc9Q8VC31 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Ccdc9Q8VC31 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ccdc9Q8VC31 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Ccdc9Q8VC31 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Ccdc9Q8VC31 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Ccdc9Q8VC31 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
Ccdc9Q8VC31 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Ccdc9Q8VC31 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc9Q8VC31 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.76■■□□□ 1.07
Ccdc9Q8VC31 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc9Q8VC31 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc9Q8VC31 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc9Q8VC31 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ccdc9Q8VC31 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Ccdc9Q8VC31 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Ccdc9Q8VC31 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC21.76■■□□□ 1.07
Ccdc9Q8VC31 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ccdc9Q8VC31 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Gm15546-201ENSMUST00000122095 826 ntBASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ccdc9Q8VC31 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ccdc9Q8VC31 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Ccdc9Q8VC31 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC21.71■■□□□ 1.07
Ccdc9Q8VC31 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
Ccdc9Q8VC31 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms