Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Syne4Q8CII8 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC20.5■□□□□ 0.87
Syne4Q8CII8 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 AC134329.2-201ENSMUST00000217897 428 ntBASIC20.5■□□□□ 0.87
Syne4Q8CII8 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Syne4Q8CII8 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Syne4Q8CII8 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Syne4Q8CII8 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Syne4Q8CII8 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Syne4Q8CII8 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC20.48■□□□□ 0.87
Syne4Q8CII8 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Syne4Q8CII8 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Syne4Q8CII8 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Syne4Q8CII8 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Syne4Q8CII8 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Syne4Q8CII8 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Syne4Q8CII8 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Syne4Q8CII8 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Syne4Q8CII8 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC20.47■□□□□ 0.87
Syne4Q8CII8 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Syne4Q8CII8 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Syne4Q8CII8 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Syne4Q8CII8 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Syne4Q8CII8 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC20.47■□□□□ 0.87
Syne4Q8CII8 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Syne4Q8CII8 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.87
Syne4Q8CII8 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.45■□□□□ 0.86
Syne4Q8CII8 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Syne4Q8CII8 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Syne4Q8CII8 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC20.45■□□□□ 0.86
Syne4Q8CII8 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Syne4Q8CII8 Gm25016-201ENSMUST00000158399 131 ntBASIC20.45■□□□□ 0.86
Syne4Q8CII8 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Syne4Q8CII8 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Syne4Q8CII8 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Syne4Q8CII8 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Syne4Q8CII8 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Syne4Q8CII8 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.44■□□□□ 0.86
Syne4Q8CII8 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Syne4Q8CII8 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms