Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nup88Q8CEC0 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC21.29■■□□□ 1
Nup88Q8CEC0 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Nup88Q8CEC0 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC21.29■■□□□ 1
Nup88Q8CEC0 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Nup88Q8CEC0 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Nup88Q8CEC0 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Nup88Q8CEC0 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Nup88Q8CEC0 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC21.28■■□□□ 1
Nup88Q8CEC0 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nup88Q8CEC0 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC21.28■■□□□ 1
Nup88Q8CEC0 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
Nup88Q8CEC0 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC21.28■■□□□ 1
Nup88Q8CEC0 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nup88Q8CEC0 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nup88Q8CEC0 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Nup88Q8CEC0 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Nup88Q8CEC0 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nup88Q8CEC0 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nup88Q8CEC0 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Nup88Q8CEC0 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nup88Q8CEC0 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Nup88Q8CEC0 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nup88Q8CEC0 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Nup88Q8CEC0 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Nup88Q8CEC0 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC21.27■■□□□ 1
Nup88Q8CEC0 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Nup88Q8CEC0 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nup88Q8CEC0 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC21.27■■□□□ 1
Nup88Q8CEC0 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Nup88Q8CEC0 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Gm37856-201ENSMUST00000191634 999 ntBASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Nup88Q8CEC0 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Gm37811-201ENSMUST00000192416 2601 ntBASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Rab3c-203ENSMUST00000224180 967 ntBASIC21.25■□□□□ 0.99
Nup88Q8CEC0 AC135637.1-201ENSMUST00000227750 365 ntBASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Nup88Q8CEC0 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Nup88Q8CEC0 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Nup88Q8CEC0 Gm13168-201ENSMUST00000121771 632 ntBASIC21.24■□□□□ 0.99
Nup88Q8CEC0 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC21.24■□□□□ 0.99
Nup88Q8CEC0 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nup88Q8CEC0 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
Nup88Q8CEC0 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Nup88Q8CEC0 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Nup88Q8CEC0 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC21.23■□□□□ 0.99
Nup88Q8CEC0 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Gm37563-201ENSMUST00000192580 1513 ntBASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Nup88Q8CEC0 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 58.4 ms