Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sh3rf2Q8BZT2 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Sh3rf2Q8BZT2 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Gm12382-201ENSMUST00000122005 922 ntBASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Gm5417-201ENSMUST00000079706 384 ntBASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sh3rf2Q8BZT2 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Gm13836-201ENSMUST00000121159 501 ntBASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sh3rf2Q8BZT2 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf2Q8BZT2 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf2Q8BZT2 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.28■□□□□ 0.52
Sh3rf2Q8BZT2 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf2Q8BZT2 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.28■□□□□ 0.52
Sh3rf2Q8BZT2 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf2Q8BZT2 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf2Q8BZT2 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sh3rf2Q8BZT2 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf2Q8BZT2 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf2Q8BZT2 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf2Q8BZT2 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf2Q8BZT2 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf2Q8BZT2 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.27■□□□□ 0.52
Sh3rf2Q8BZT2 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.27■□□□□ 0.52
Sh3rf2Q8BZT2 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.27■□□□□ 0.52
Sh3rf2Q8BZT2 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sh3rf2Q8BZT2 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf2Q8BZT2 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf2Q8BZT2 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.27■□□□□ 0.51
Sh3rf2Q8BZT2 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf2Q8BZT2 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf2Q8BZT2 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Sh3rf2Q8BZT2 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.27■□□□□ 0.51
Sh3rf2Q8BZT2 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.26■□□□□ 0.51
Sh3rf2Q8BZT2 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.26■□□□□ 0.51
Sh3rf2Q8BZT2 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms