Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Ddx41-204ENSMUST00000224765 2199 ntBASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Tpm4Q6IRU2 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Tpm4Q6IRU2 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
Tpm4Q6IRU2 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm4Q6IRU2 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Tpm4Q6IRU2 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
Tpm4Q6IRU2 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Tpm4Q6IRU2 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm4Q6IRU2 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Tpm4Q6IRU2 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Tpm4Q6IRU2 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Gm9988-201ENSMUST00000069786 435 ntBASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Tpm4Q6IRU2 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Tpm4Q6IRU2 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Tpm4Q6IRU2 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms