Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Gm17661-201ENSMUST00000170317 270 ntBASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trav8d-2Q5R1B6 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Golph3-202ENSMUST00000226517 2359 ntBASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-2Q5R1B6 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav8d-2Q5R1B6 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav8d-2Q5R1B6 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Gm4974-201ENSMUST00000209974 875 ntBASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trav8d-2Q5R1B6 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Gm13474-201ENSMUST00000122466 815 ntBASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
Trav8d-2Q5R1B6 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-2Q5R1B6 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-2Q5R1B6 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Gm17971-201ENSMUST00000190239 806 ntBASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav8d-2Q5R1B6 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav8d-2Q5R1B6 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav8d-2Q5R1B6 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav8d-2Q5R1B6 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav8d-2Q5R1B6 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav8d-2Q5R1B6 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav8d-2Q5R1B6 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms