Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Col6a1Q04857 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a1Q04857 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.91■□□□□ 0.78
Col6a1Q04857 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a1Q04857 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a1Q04857 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a1Q04857 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a1Q04857 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col6a1Q04857 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a1Q04857 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a1Q04857 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.9■□□□□ 0.78
Col6a1Q04857 AA414768-201ENSMUST00000121924 1257 ntBASIC19.9■□□□□ 0.78
Col6a1Q04857 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a1Q04857 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Col6a1Q04857 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a1Q04857 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a1Q04857 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a1Q04857 Zfp783-201ENSMUST00000095946 670 ntBASIC19.9■□□□□ 0.78
Col6a1Q04857 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Col6a1Q04857 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a1Q04857 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col6a1Q04857 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col6a1Q04857 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col6a1Q04857 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Gm42545-201ENSMUST00000202755 922 ntBASIC19.89■□□□□ 0.77
Col6a1Q04857 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Gm18032-201ENSMUST00000222541 538 ntBASIC19.89■□□□□ 0.77
Col6a1Q04857 AC159205.6-201ENSMUST00000224935 887 ntBASIC19.89■□□□□ 0.77
Col6a1Q04857 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.89■□□□□ 0.77
Col6a1Q04857 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Col6a1Q04857 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col6a1Q04857 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col6a1Q04857 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.88■□□□□ 0.77
Col6a1Q04857 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.88■□□□□ 0.77
Col6a1Q04857 Gm9103-201ENSMUST00000119371 405 ntBASIC19.88■□□□□ 0.77
Col6a1Q04857 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.88■□□□□ 0.77
Col6a1Q04857 Gm37292-201ENSMUST00000192062 758 ntBASIC19.88■□□□□ 0.77
Col6a1Q04857 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.88■□□□□ 0.77
Col6a1Q04857 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
Col6a1Q04857 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col6a1Q04857 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col6a1Q04857 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a1Q04857 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a1Q04857 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a1Q04857 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a1Q04857 Gm15375-201ENSMUST00000119510 849 ntBASIC19.87■□□□□ 0.77
Col6a1Q04857 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a1Q04857 Gm18959-201ENSMUST00000208954 655 ntBASIC19.87■□□□□ 0.77
Col6a1Q04857 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a1Q04857 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a1Q04857 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
Col6a1Q04857 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col6a1Q04857 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a1Q04857 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.86■□□□□ 0.77
Col6a1Q04857 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a1Q04857 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a1Q04857 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Col6a1Q04857 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Col6a1Q04857 Ank2-226ENSMUST00000189368 339 ntBASIC19.86■□□□□ 0.77
Col6a1Q04857 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC19.86■□□□□ 0.77
Col6a1Q04857 Gm18101-201ENSMUST00000215769 548 ntBASIC19.86■□□□□ 0.77
Col6a1Q04857 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a1Q04857 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a1Q04857 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a1Q04857 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col6a1Q04857 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.85■□□□□ 0.77
Col6a1Q04857 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col6a1Q04857 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col6a1Q04857 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col6a1Q04857 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col6a1Q04857 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC19.85■□□□□ 0.77
Col6a1Q04857 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.85■□□□□ 0.77
Col6a1Q04857 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Col6a1Q04857 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Col6a1Q04857 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.85■□□□□ 0.77
Col6a1Q04857 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col6a1Q04857 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col6a1Q04857 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col6a1Q04857 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col6a1Q04857 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col6a1Q04857 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col6a1Q04857 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col6a1Q04857 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Col6a1Q04857 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col6a1Q04857 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC19.84■□□□□ 0.77
Col6a1Q04857 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col6a1Q04857 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col6a1Q04857 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
Col6a1Q04857 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms