Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Col2a1P28481 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col2a1P28481 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col2a1P28481 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col2a1P28481 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col2a1P28481 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC20.61■□□□□ 0.89
Col2a1P28481 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col2a1P28481 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col2a1P28481 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col2a1P28481 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.6■□□□□ 0.89
Col2a1P28481 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Col2a1P28481 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col2a1P28481 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col2a1P28481 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.6■□□□□ 0.89
Col2a1P28481 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.6■□□□□ 0.89
Col2a1P28481 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.6■□□□□ 0.89
Col2a1P28481 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col2a1P28481 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col2a1P28481 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col2a1P28481 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Col2a1P28481 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col2a1P28481 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col2a1P28481 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col2a1P28481 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col2a1P28481 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Col2a1P28481 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col2a1P28481 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col2a1P28481 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC20.58■□□□□ 0.89
Col2a1P28481 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col2a1P28481 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.58■□□□□ 0.89
Col2a1P28481 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Col2a1P28481 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col2a1P28481 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col2a1P28481 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Gm12085-201ENSMUST00000119263 940 ntBASIC20.57■□□□□ 0.88
Col2a1P28481 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC20.57■□□□□ 0.88
Col2a1P28481 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Gm27463-201ENSMUST00000183569 57 ntBASIC20.57■□□□□ 0.88
Col2a1P28481 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Col2a1P28481 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Col2a1P28481 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.57■□□□□ 0.88
Col2a1P28481 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Col2a1P28481 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col2a1P28481 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC20.56■□□□□ 0.88
Col2a1P28481 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col2a1P28481 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC20.56■□□□□ 0.88
Col2a1P28481 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC20.56■□□□□ 0.88
Col2a1P28481 Gm24841-201ENSMUST00000158676 357 ntBASIC20.56■□□□□ 0.88
Col2a1P28481 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC20.56■□□□□ 0.88
Col2a1P28481 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col2a1P28481 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Col2a1P28481 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col2a1P28481 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col2a1P28481 Notumos-201ENSMUST00000151998 2659 ntBASIC20.56■□□□□ 0.88
Col2a1P28481 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col2a1P28481 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col2a1P28481 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col2a1P28481 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col2a1P28481 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col2a1P28481 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col2a1P28481 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col2a1P28481 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col2a1P28481 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.54■□□□□ 0.88
Col2a1P28481 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.54■□□□□ 0.88
Col2a1P28481 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC20.54■□□□□ 0.88
Col2a1P28481 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col2a1P28481 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col2a1P28481 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col2a1P28481 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Col2a1P28481 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms