Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RaraP11416 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.52■□□□□ 0.72
RaraP11416 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
RaraP11416 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
RaraP11416 Gm7514-201ENSMUST00000209475 934 ntBASIC19.52■□□□□ 0.72
RaraP11416 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RaraP11416 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
RaraP11416 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RaraP11416 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.52■□□□□ 0.72
RaraP11416 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RaraP11416 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
RaraP11416 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
RaraP11416 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RaraP11416 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
RaraP11416 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RaraP11416 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC19.52■□□□□ 0.71
RaraP11416 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RaraP11416 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RaraP11416 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
RaraP11416 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RaraP11416 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RaraP11416 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
RaraP11416 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
RaraP11416 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RaraP11416 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
RaraP11416 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RaraP11416 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RaraP11416 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.49■□□□□ 0.71
RaraP11416 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
RaraP11416 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.49■□□□□ 0.71
RaraP11416 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.49■□□□□ 0.71
RaraP11416 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.49■□□□□ 0.71
RaraP11416 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RaraP11416 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RaraP11416 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
RaraP11416 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
RaraP11416 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.48■□□□□ 0.71
RaraP11416 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RaraP11416 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.48■□□□□ 0.71
RaraP11416 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RaraP11416 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
RaraP11416 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RaraP11416 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RaraP11416 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
RaraP11416 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
RaraP11416 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RaraP11416 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RaraP11416 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
RaraP11416 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.47■□□□□ 0.71
RaraP11416 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
RaraP11416 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
RaraP11416 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RaraP11416 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
RaraP11416 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
RaraP11416 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RaraP11416 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RaraP11416 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RaraP11416 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RaraP11416 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RaraP11416 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RaraP11416 Gm42642-201ENSMUST00000200683 355 ntBASIC19.46■□□□□ 0.71
RaraP11416 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
RaraP11416 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RaraP11416 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RaraP11416 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RaraP11416 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RaraP11416 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RaraP11416 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RaraP11416 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms