Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC14.01□□□□□ -0.17
Hoxd3P09027 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC14.01□□□□□ -0.17
Hoxd3P09027 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC14.01□□□□□ -0.17
Hoxd3P09027 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC14.01□□□□□ -0.17
Hoxd3P09027 AC163280.1-201ENSMUST00000228194 1100 ntBASIC14.01□□□□□ -0.17
Hoxd3P09027 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Hoxd3P09027 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Hoxd3P09027 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC14.01□□□□□ -0.17
Hoxd3P09027 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC14□□□□□ -0.17
Hoxd3P09027 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Hoxd3P09027 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Hoxd3P09027 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC14□□□□□ -0.17
Hoxd3P09027 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC14□□□□□ -0.17
Hoxd3P09027 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Hoxd3P09027 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Hoxd3P09027 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Gm15853-202ENSMUST00000195518 2041 ntBASIC13.99□□□□□ -0.17
Hoxd3P09027 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
Hoxd3P09027 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC13.99□□□□□ -0.17
Hoxd3P09027 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Hoxd3P09027 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC13.98□□□□□ -0.17
Hoxd3P09027 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Rncr4-201ENSMUST00000194541 2234 ntBASIC13.98□□□□□ -0.17
Hoxd3P09027 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Hoxd3P09027 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Hoxd3P09027 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC13.98□□□□□ -0.17
Hoxd3P09027 Zfp783-201ENSMUST00000095946 670 ntBASIC13.98□□□□□ -0.17
Hoxd3P09027 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Hoxd3P09027 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hoxd3P09027 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Hoxd3P09027 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Hoxd3P09027 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Gm15378-201ENSMUST00000121894 207 ntBASIC13.97□□□□□ -0.17
Hoxd3P09027 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC13.97□□□□□ -0.17
Hoxd3P09027 H2-K2-201ENSMUST00000174250 1049 ntBASIC13.97□□□□□ -0.17
Hoxd3P09027 Alkbh1-212ENSMUST00000185301 408 ntBASIC13.97□□□□□ -0.17
Hoxd3P09027 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Hoxd3P09027 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC13.97□□□□□ -0.17
Hoxd3P09027 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 BC021767-201ENSMUST00000126387 1716 ntBASIC13.97□□□□□ -0.17
Hoxd3P09027 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC13.97□□□□□ -0.17
Hoxd3P09027 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC13.97□□□□□ -0.17
Hoxd3P09027 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC13.97□□□□□ -0.17
Hoxd3P09027 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Hoxd3P09027 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hoxd3P09027 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hoxd3P09027 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hoxd3P09027 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hoxd3P09027 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Hoxd3P09027 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hoxd3P09027 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hoxd3P09027 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Hoxd3P09027 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Hoxd3P09027 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 73 ms