Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Pcdha4O88689 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha4O88689 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.2■□□□□ 0.82
Pcdha4O88689 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.2■□□□□ 0.82
Pcdha4O88689 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdha4O88689 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha4O88689 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha4O88689 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha4O88689 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.19■□□□□ 0.82
Pcdha4O88689 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha4O88689 Alkbh1-212ENSMUST00000185301 408 ntBASIC20.19■□□□□ 0.82
Pcdha4O88689 Gm18666-201ENSMUST00000190039 958 ntBASIC20.19■□□□□ 0.82
Pcdha4O88689 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha4O88689 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha4O88689 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.19■□□□□ 0.82
Pcdha4O88689 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdha4O88689 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.19■□□□□ 0.82
Pcdha4O88689 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha4O88689 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Pcdha4O88689 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdha4O88689 Gm8520-201ENSMUST00000186517 868 ntBASIC20.18■□□□□ 0.82
Pcdha4O88689 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Pcdha4O88689 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha4O88689 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha4O88689 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha4O88689 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha4O88689 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha4O88689 Gm5643-201ENSMUST00000117081 966 ntBASIC20.17■□□□□ 0.82
Pcdha4O88689 Gm13168-201ENSMUST00000121771 632 ntBASIC20.17■□□□□ 0.82
Pcdha4O88689 Gm10138-203ENSMUST00000206952 366 ntBASIC20.17■□□□□ 0.82
Pcdha4O88689 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha4O88689 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha4O88689 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdha4O88689 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Pcdha4O88689 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha4O88689 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.16■□□□□ 0.82
Pcdha4O88689 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha4O88689 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdha4O88689 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Pcdha4O88689 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Pcdha4O88689 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Pcdha4O88689 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Pcdha4O88689 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.16■□□□□ 0.82
Pcdha4O88689 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha4O88689 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha4O88689 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha4O88689 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.15■□□□□ 0.82
Pcdha4O88689 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.15■□□□□ 0.82
Pcdha4O88689 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha4O88689 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdha4O88689 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Pcdha4O88689 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Pcdha4O88689 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.82
Pcdha4O88689 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.14■□□□□ 0.81
Pcdha4O88689 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha4O88689 Nrn1-203ENSMUST00000223611 1443 ntBASIC20.14■□□□□ 0.81
Pcdha4O88689 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha4O88689 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha4O88689 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha4O88689 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Pcdha4O88689 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdha4O88689 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Pcdha4O88689 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Pcdha4O88689 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC20.13■□□□□ 0.81
Pcdha4O88689 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.13■□□□□ 0.81
Pcdha4O88689 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdha4O88689 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha4O88689 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha4O88689 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.12■□□□□ 0.81
Pcdha4O88689 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha4O88689 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha4O88689 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Pcdha4O88689 H2-K2-201ENSMUST00000174250 1049 ntBASIC20.12■□□□□ 0.81
Pcdha4O88689 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha4O88689 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha4O88689 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha4O88689 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
Pcdha4O88689 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdha4O88689 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.11■□□□□ 0.81
Pcdha4O88689 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdha4O88689 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdha4O88689 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdha4O88689 Gm15375-201ENSMUST00000119510 849 ntBASIC20.11■□□□□ 0.81
Pcdha4O88689 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdha4O88689 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdha4O88689 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdha4O88689 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdha4O88689 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms