Protein–RNA interactions for Protein: Q91XX8

Pcdhgb1, Protocadherin gamma B1, mousemouse

Predictions only

Length 918 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb1Q91XX8 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Pcdhgb1Q91XX8 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Gm13158-201ENSMUST00000122007 736 ntBASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdhgb1Q91XX8 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdhgb1Q91XX8 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdhgb1Q91XX8 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Pcdhgb1Q91XX8 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Pcdhgb1Q91XX8 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Pcdhgb1Q91XX8 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
Pcdhgb1Q91XX8 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Pcdhgb1Q91XX8 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Pcdhgb1Q91XX8 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Pcdhgb1Q91XX8 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.76■□□□□ 0.59
Pcdhgb1Q91XX8 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Pcdhgb1Q91XX8 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Pcdhgb1Q91XX8 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms