Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Lsm1Q8VC85 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Gm10033-202ENSMUST00000211874 928 ntBASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.34■□□□□ 0.37
Lsm1Q8VC85 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lsm1Q8VC85 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC17.33■□□□□ 0.37
Lsm1Q8VC85 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
Lsm1Q8VC85 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lsm1Q8VC85 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lsm1Q8VC85 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Lsm1Q8VC85 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Gm37374-201ENSMUST00000194954 1829 ntBASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Lsm1Q8VC85 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Lsm1Q8VC85 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Gm7514-201ENSMUST00000209475 934 ntBASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Lsm1Q8VC85 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Lsm1Q8VC85 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms