Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Clrn1Q8K445 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clrn1Q8K445 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clrn1Q8K445 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clrn1Q8K445 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clrn1Q8K445 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.12■□□□□ 0.33
Clrn1Q8K445 Dmtn-210ENSMUST00000228824 2377 ntBASIC17.12■□□□□ 0.33
Clrn1Q8K445 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clrn1Q8K445 Gm43213-201ENSMUST00000151866 1790 ntBASIC17.12■□□□□ 0.33
Clrn1Q8K445 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clrn1Q8K445 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Clrn1Q8K445 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.11■□□□□ 0.33
Clrn1Q8K445 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Gm13148-201ENSMUST00000118892 745 ntBASIC17.11■□□□□ 0.33
Clrn1Q8K445 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clrn1Q8K445 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Gm22325-201ENSMUST00000158904 308 ntBASIC17.1■□□□□ 0.33
Clrn1Q8K445 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Gm10602-201ENSMUST00000098239 609 ntBASIC17.1■□□□□ 0.33
Clrn1Q8K445 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clrn1Q8K445 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Clrn1Q8K445 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Clrn1Q8K445 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Clrn1Q8K445 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Clrn1Q8K445 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Clrn1Q8K445 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Clrn1Q8K445 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.08■□□□□ 0.32
Clrn1Q8K445 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Clrn1Q8K445 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clrn1Q8K445 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clrn1Q8K445 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Clrn1Q8K445 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Clrn1Q8K445 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clrn1Q8K445 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clrn1Q8K445 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clrn1Q8K445 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clrn1Q8K445 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Clrn1Q8K445 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.07■□□□□ 0.32
Clrn1Q8K445 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Clrn1Q8K445 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clrn1Q8K445 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Clrn1Q8K445 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clrn1Q8K445 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Clrn1Q8K445 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Clrn1Q8K445 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Clrn1Q8K445 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.06■□□□□ 0.32
Clrn1Q8K445 Gm5408-201ENSMUST00000197998 747 ntBASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms