Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Trim47Q8C0E3 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 H2-K2-201ENSMUST00000174250 1049 ntBASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Gm10698-201ENSMUST00000182663 604 ntBASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Gm18666-201ENSMUST00000190039 958 ntBASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim47Q8C0E3 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trim47Q8C0E3 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim47Q8C0E3 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC20.08■□□□□ 0.81
Trim47Q8C0E3 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.08■□□□□ 0.81
Trim47Q8C0E3 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC20.08■□□□□ 0.81
Trim47Q8C0E3 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trim47Q8C0E3 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Trim47Q8C0E3 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim47Q8C0E3 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim47Q8C0E3 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Fst-202ENSMUST00000223640 2612 ntBASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim47Q8C0E3 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Gm10812-201ENSMUST00000099864 546 ntBASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC20.04■□□□□ 0.8
Trim47Q8C0E3 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim47Q8C0E3 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim47Q8C0E3 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim47Q8C0E3 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim47Q8C0E3 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim47Q8C0E3 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim47Q8C0E3 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim47Q8C0E3 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim47Q8C0E3 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
Trim47Q8C0E3 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC20.02■□□□□ 0.8
Trim47Q8C0E3 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim47Q8C0E3 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim47Q8C0E3 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms