Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Six3Q62233 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Six3Q62233 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC17.7■□□□□ 0.42
Six3Q62233 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC17.7■□□□□ 0.42
Six3Q62233 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Six3Q62233 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC17.69■□□□□ 0.42
Six3Q62233 Gm42642-201ENSMUST00000200683 355 ntBASIC17.69■□□□□ 0.42
Six3Q62233 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Six3Q62233 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.69■□□□□ 0.42
Six3Q62233 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.69■□□□□ 0.42
Six3Q62233 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
Six3Q62233 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Six3Q62233 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Six3Q62233 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.68■□□□□ 0.42
Six3Q62233 Gm18671-201ENSMUST00000214826 683 ntBASIC17.68■□□□□ 0.42
Six3Q62233 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
Six3Q62233 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Six3Q62233 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Six3Q62233 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Six3Q62233 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Six3Q62233 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Six3Q62233 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Six3Q62233 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Six3Q62233 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Six3Q62233 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Six3Q62233 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Six3Q62233 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Six3Q62233 Gm5874-201ENSMUST00000096101 508 ntBASIC17.67■□□□□ 0.42
Six3Q62233 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Six3Q62233 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Six3Q62233 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Six3Q62233 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Six3Q62233 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Six3Q62233 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Six3Q62233 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Six3Q62233 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Six3Q62233 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Six3Q62233 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Six3Q62233 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Six3Q62233 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Six3Q62233 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Six3Q62233 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.65■□□□□ 0.42
Six3Q62233 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
Six3Q62233 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Six3Q62233 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC17.65■□□□□ 0.42
Six3Q62233 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Six3Q62233 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Six3Q62233 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Six3Q62233 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Six3Q62233 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Six3Q62233 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Six3Q62233 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Six3Q62233 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Six3Q62233 Gm38345-201ENSMUST00000192635 1748 ntBASIC17.64■□□□□ 0.41
Six3Q62233 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms