Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx3P48381 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Rfx3P48381 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
Rfx3P48381 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC16.39■□□□□ 0.21
Rfx3P48381 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Rfx3P48381 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Rfx3P48381 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Rfx3P48381 Gm42778-201ENSMUST00000199644 553 ntBASIC16.39■□□□□ 0.21
Rfx3P48381 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Rfx3P48381 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx3P48381 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Rfx3P48381 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 Gm13234-201ENSMUST00000120010 747 ntBASIC16.38■□□□□ 0.21
Rfx3P48381 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 Gm18284-201ENSMUST00000172604 624 ntBASIC16.38■□□□□ 0.21
Rfx3P48381 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx3P48381 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC16.37■□□□□ 0.21
Rfx3P48381 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 Gm13146-201ENSMUST00000118508 780 ntBASIC16.37■□□□□ 0.21
Rfx3P48381 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC16.37■□□□□ 0.21
Rfx3P48381 Gm10493-201ENSMUST00000097270 612 ntBASIC16.37■□□□□ 0.21
Rfx3P48381 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
Rfx3P48381 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Rfx3P48381 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC16.37■□□□□ 0.21
Rfx3P48381 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx3P48381 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Fst-202ENSMUST00000223640 2612 ntBASIC16.36■□□□□ 0.21
Rfx3P48381 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC16.36■□□□□ 0.21
Rfx3P48381 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC16.36■□□□□ 0.21
Rfx3P48381 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Rfx3P48381 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Rfx3P48381 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC16.36■□□□□ 0.21
Rfx3P48381 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Rfx3P48381 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx3P48381 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Gm5828-201ENSMUST00000071842 1860 ntBASIC16.35■□□□□ 0.21
Rfx3P48381 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC16.35■□□□□ 0.21
Rfx3P48381 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Gm19094-201ENSMUST00000209791 1246 ntBASIC16.35■□□□□ 0.21
Rfx3P48381 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Rfx3P48381 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
Rfx3P48381 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx3P48381 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms