Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Gm18666-201ENSMUST00000190039 958 ntBASIC17.19■□□□□ 0.34
Msx1P13297 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.19■□□□□ 0.34
Msx1P13297 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Msx1P13297 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msx1P13297 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msx1P13297 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msx1P13297 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Msx1P13297 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.18■□□□□ 0.34
Msx1P13297 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msx1P13297 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msx1P13297 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msx1P13297 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Msx1P13297 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Gm15565-201ENSMUST00000118890 427 ntBASIC17.17■□□□□ 0.34
Msx1P13297 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.17■□□□□ 0.34
Msx1P13297 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Msx1P13297 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Gm11643-201ENSMUST00000119578 864 ntBASIC17.16■□□□□ 0.34
Msx1P13297 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Msx1P13297 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.16■□□□□ 0.34
Msx1P13297 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.16■□□□□ 0.34
Msx1P13297 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Msx1P13297 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Msx1P13297 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Msx1P13297 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msx1P13297 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msx1P13297 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msx1P13297 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msx1P13297 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Msx1P13297 AC153881.1-201ENSMUST00000214448 284 ntBASIC17.15■□□□□ 0.34
Msx1P13297 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msx1P13297 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Msx1P13297 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msx1P13297 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Msx1P13297 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.15■□□□□ 0.34
Msx1P13297 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.15■□□□□ 0.34
Msx1P13297 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Msx1P13297 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Msx1P13297 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Msx1P13297 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
Msx1P13297 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
Msx1P13297 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Msx1P13297 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Msx1P13297 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
Msx1P13297 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Msx1P13297 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Msx1P13297 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msx1P13297 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msx1P13297 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.13■□□□□ 0.33
Msx1P13297 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Msx1P13297 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms