Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Chmp6P0C0A3 Shroom3-211ENSMUST00000225438 5742 ntBASIC19.72■□□□□ 0.75
Chmp6P0C0A3 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Chmp6P0C0A3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.72■□□□□ 0.75
Chmp6P0C0A3 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Chmp6P0C0A3 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Chmp6P0C0A3 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Gm10461-201ENSMUST00000202073 4786 ntBASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Chmp6P0C0A3 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.71■□□□□ 0.74
Chmp6P0C0A3 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Chmp6P0C0A3 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Chmp6P0C0A3 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Chmp6P0C0A3 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.67■□□□□ 0.74
Chmp6P0C0A3 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Chmp6P0C0A3 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms