Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.47■□□□□ 0.71
Nr1i3O35627 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Nr1i3O35627 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.47■□□□□ 0.71
Nr1i3O35627 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Nr1i3O35627 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1i3O35627 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.47■□□□□ 0.71
Nr1i3O35627 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1i3O35627 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Nr1i3O35627 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.46■□□□□ 0.71
Nr1i3O35627 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1i3O35627 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1i3O35627 Gm18671-201ENSMUST00000214826 683 ntBASIC19.46■□□□□ 0.71
Nr1i3O35627 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1i3O35627 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1i3O35627 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1i3O35627 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1i3O35627 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1i3O35627 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1i3O35627 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1i3O35627 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1i3O35627 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1i3O35627 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Nr1i3O35627 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.45■□□□□ 0.7
Nr1i3O35627 Gm42642-201ENSMUST00000200683 355 ntBASIC19.45■□□□□ 0.7
Nr1i3O35627 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1i3O35627 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1i3O35627 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Nr1i3O35627 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.44■□□□□ 0.7
Nr1i3O35627 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Nr1i3O35627 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Nr1i3O35627 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Nr1i3O35627 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1i3O35627 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.43■□□□□ 0.7
Nr1i3O35627 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.43■□□□□ 0.7
Nr1i3O35627 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.43■□□□□ 0.7
Nr1i3O35627 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
Nr1i3O35627 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1i3O35627 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1i3O35627 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1i3O35627 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1i3O35627 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1i3O35627 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.42■□□□□ 0.7
Nr1i3O35627 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.42■□□□□ 0.7
Nr1i3O35627 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC19.42■□□□□ 0.7
Nr1i3O35627 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1i3O35627 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1i3O35627 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1i3O35627 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.41■□□□□ 0.7
Nr1i3O35627 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.41■□□□□ 0.7
Nr1i3O35627 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.41■□□□□ 0.7
Nr1i3O35627 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
Nr1i3O35627 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1i3O35627 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.4■□□□□ 0.7
Nr1i3O35627 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms