Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Col13a1Q9R1N9 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Alkbh1-212ENSMUST00000185301 408 ntBASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Col13a1Q9R1N9 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col13a1Q9R1N9 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col13a1Q9R1N9 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col13a1Q9R1N9 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Gm18101-201ENSMUST00000215769 548 ntBASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col13a1Q9R1N9 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms