Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lsm1Q8VC85 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lsm1Q8VC85 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lsm1Q8VC85 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.43■□□□□ 0.38
Lsm1Q8VC85 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lsm1Q8VC85 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Lsm1Q8VC85 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Gm10493-201ENSMUST00000097270 612 ntBASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Lsm1Q8VC85 Gm43672-201ENSMUST00000199072 1731 ntBASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Gm42778-201ENSMUST00000199644 553 ntBASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Lsm1Q8VC85 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Gm6420-201ENSMUST00000193885 723 ntBASIC17.4■□□□□ 0.38
Lsm1Q8VC85 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.4■□□□□ 0.38
Lsm1Q8VC85 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.4■□□□□ 0.38
Lsm1Q8VC85 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.4■□□□□ 0.38
Lsm1Q8VC85 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Lsm1Q8VC85 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Lsm1Q8VC85 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
Lsm1Q8VC85 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Ap3s1-204ENSMUST00000225520 957 ntBASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Lsm1Q8VC85 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Nespas-201ENSMUST00000143738 1083 ntBASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Gm38345-201ENSMUST00000192635 1748 ntBASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.38■□□□□ 0.37
Lsm1Q8VC85 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lsm1Q8VC85 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lsm1Q8VC85 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lsm1Q8VC85 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lsm1Q8VC85 Gm22325-201ENSMUST00000158904 308 ntBASIC17.37■□□□□ 0.37
Lsm1Q8VC85 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Lsm1Q8VC85 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Lsm1Q8VC85 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.37■□□□□ 0.37
Lsm1Q8VC85 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Lsm1Q8VC85 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms