Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col7a1Q63870 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Col7a1Q63870 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC15.25■□□□□ 0.03
Col7a1Q63870 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col7a1Q63870 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col7a1Q63870 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col7a1Q63870 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col7a1Q63870 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col7a1Q63870 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col7a1Q63870 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col7a1Q63870 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC15.24■□□□□ 0.03
Col7a1Q63870 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC15.24■□□□□ 0.03
Col7a1Q63870 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Gm8309-201ENSMUST00000206627 1448 ntBASIC15.24■□□□□ 0.03
Col7a1Q63870 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col7a1Q63870 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col7a1Q63870 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Gm2651-201ENSMUST00000203560 838 ntBASIC15.23■□□□□ 0.03
Col7a1Q63870 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC15.23■□□□□ 0.03
Col7a1Q63870 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC15.23■□□□□ 0.03
Col7a1Q63870 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Col7a1Q63870 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Col7a1Q63870 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col7a1Q63870 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col7a1Q63870 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col7a1Q63870 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col7a1Q63870 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col7a1Q63870 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col7a1Q63870 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col7a1Q63870 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col7a1Q63870 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col7a1Q63870 Vti1a-206ENSMUST00000225529 1244 ntBASIC15.22■□□□□ 0.03
Col7a1Q63870 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col7a1Q63870 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Col7a1Q63870 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col7a1Q63870 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col7a1Q63870 Gm43332-201ENSMUST00000202511 1044 ntBASIC15.21■□□□□ 0.03
Col7a1Q63870 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC15.21■□□□□ 0.03
Col7a1Q63870 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col7a1Q63870 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col7a1Q63870 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col7a1Q63870 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col7a1Q63870 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col7a1Q63870 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC15.21■□□□□ 0.03
Col7a1Q63870 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC15.21■□□□□ 0.03
Col7a1Q63870 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col7a1Q63870 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC15.2■□□□□ 0.02
Col7a1Q63870 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC15.2■□□□□ 0.02
Col7a1Q63870 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Col7a1Q63870 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Gm15794-201ENSMUST00000120182 631 ntBASIC15.2■□□□□ 0.02
Col7a1Q63870 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC15.2■□□□□ 0.02
Col7a1Q63870 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC15.2■□□□□ 0.02
Col7a1Q63870 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Col7a1Q63870 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Col7a1Q63870 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col7a1Q63870 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col7a1Q63870 AC131586.3-201ENSMUST00000228355 1367 ntBASIC15.19■□□□□ 0.02
Col7a1Q63870 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col7a1Q63870 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col7a1Q63870 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col7a1Q63870 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC15.19■□□□□ 0.02
Col7a1Q63870 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
Col7a1Q63870 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col7a1Q63870 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col7a1Q63870 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col7a1Q63870 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms