Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
PRKDCP78527 KRT18P22-201ENST00000402024 1347 ntBASIC15.29■□□□□ 0.04
PRKDCP78527 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKDCP78527 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC15.29■□□□□ 0.04
PRKDCP78527 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKDCP78527 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.29■□□□□ 0.04
PRKDCP78527 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC15.29■□□□□ 0.04
PRKDCP78527 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC15.29■□□□□ 0.04
PRKDCP78527 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC15.29■□□□□ 0.04
PRKDCP78527 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
PRKDCP78527 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKDCP78527 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PRKDCP78527 WWOX-216ENST00000569818 525 ntBASIC15.29■□□□□ 0.04
PRKDCP78527 REXO1L10P-201ENST00000615707 1290 ntBASIC15.29■□□□□ 0.04
PRKDCP78527 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKDCP78527 CRK-204ENST00000574295 1391 ntTSL 5 BASIC15.29■□□□□ 0.04
PRKDCP78527 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PRKDCP78527 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC15.28■□□□□ 0.04
PRKDCP78527 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PRKDCP78527 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.28■□□□□ 0.04
PRKDCP78527 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC15.28■□□□□ 0.04
PRKDCP78527 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PRKDCP78527 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 AC079598.2-202ENST00000546624 1451 ntBASIC15.28■□□□□ 0.04
PRKDCP78527 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC15.28■□□□□ 0.04
PRKDCP78527 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PRKDCP78527 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 KRASP1-201ENST00000407852 552 ntBASIC15.28■□□□□ 0.04
PRKDCP78527 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.28■□□□□ 0.04
PRKDCP78527 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.28■□□□□ 0.04
PRKDCP78527 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PRKDCP78527 RARG-204ENST00000543726 1779 ntTSL 2 BASIC15.27■□□□□ 0.04
PRKDCP78527 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PRKDCP78527 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC15.27■□□□□ 0.04
PRKDCP78527 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PRKDCP78527 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PRKDCP78527 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
PRKDCP78527 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.03
PRKDCP78527 RBM17P1-201ENST00000453646 1190 ntBASIC15.27■□□□□ 0.03
PRKDCP78527 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.27■□□□□ 0.03
PRKDCP78527 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
PRKDCP78527 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC15.27■□□□□ 0.03
PRKDCP78527 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.27■□□□□ 0.03
PRKDCP78527 MYC-208ENST00000641036 567 ntBASIC15.27■□□□□ 0.03
PRKDCP78527 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PRKDCP78527 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PRKDCP78527 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC15.26■□□□□ 0.03
PRKDCP78527 GUK1-204ENST00000366721 689 ntTSL 3 BASIC15.26■□□□□ 0.03
PRKDCP78527 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 FAM21FP-204ENST00000608637 956 ntBASIC15.26■□□□□ 0.03
PRKDCP78527 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PRKDCP78527 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC15.26■□□□□ 0.03
PRKDCP78527 LINC00526-201ENST00000581067 1875 ntBASIC15.26■□□□□ 0.03
PRKDCP78527 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 AC061975.6-201ENST00000579045 1553 ntBASIC15.26■□□□□ 0.03
PRKDCP78527 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
PRKDCP78527 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC15.26■□□□□ 0.03
PRKDCP78527 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC15.26■□□□□ 0.03
PRKDCP78527 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC15.26■□□□□ 0.03
PRKDCP78527 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.26■□□□□ 0.03
PRKDCP78527 AP000525.1-201ENST00000608286 694 ntBASIC15.26■□□□□ 0.03
PRKDCP78527 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC15.26■□□□□ 0.03
PRKDCP78527 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PRKDCP78527 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
PRKDCP78527 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
PRKDCP78527 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms