Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Sdc1P18828 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sdc1P18828 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.96□□□□□ -0.01
Sdc1P18828 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC14.96□□□□□ -0.01
Sdc1P18828 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC14.96□□□□□ -0.01
Sdc1P18828 Nsd1-203ENSMUST00000224156 1149 ntBASIC14.96□□□□□ -0.01
Sdc1P18828 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sdc1P18828 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Sdc1P18828 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Sdc1P18828 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Sdc1P18828 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
Sdc1P18828 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Sdc1P18828 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Gm9870-201ENSMUST00000063874 645 ntBASIC14.95□□□□□ -0.02
Sdc1P18828 Gm43808-201ENSMUST00000202534 2065 ntBASIC14.95□□□□□ -0.02
Sdc1P18828 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Sdc1P18828 Gm28265-201ENSMUST00000188201 2319 ntBASIC14.95□□□□□ -0.02
Sdc1P18828 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Sdc1P18828 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Sdc1P18828 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC14.95□□□□□ -0.02
Sdc1P18828 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Sdc1P18828 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Sdc1P18828 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Sdc1P18828 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Sdc1P18828 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Sdc1P18828 Gm45444-201ENSMUST00000211394 898 ntBASIC14.94□□□□□ -0.02
Sdc1P18828 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Sdc1P18828 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Sdc1P18828 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC14.94□□□□□ -0.02
Sdc1P18828 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Sdc1P18828 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC14.94□□□□□ -0.02
Sdc1P18828 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Sdc1P18828 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Sdc1P18828 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Sdc1P18828 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC14.93□□□□□ -0.02
Sdc1P18828 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Sdc1P18828 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC14.93□□□□□ -0.02
Sdc1P18828 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Serp2-204ENSMUST00000228055 705 ntBASIC14.93□□□□□ -0.02
Sdc1P18828 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Sdc1P18828 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
Sdc1P18828 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC14.92□□□□□ -0.02
Sdc1P18828 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Sdc1P18828 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC14.92□□□□□ -0.02
Sdc1P18828 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Sdc1P18828 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC14.92□□□□□ -0.02
Sdc1P18828 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms