Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC14.65□□□□□ -0.07
Cdx1P18111 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
Cdx1P18111 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Cdx1P18111 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Cdx1P18111 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.64□□□□□ -0.07
Cdx1P18111 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC14.64□□□□□ -0.07
Cdx1P18111 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
Cdx1P18111 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Cdx1P18111 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
Cdx1P18111 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Gm28265-201ENSMUST00000188201 2319 ntBASIC14.64□□□□□ -0.07
Cdx1P18111 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdx1P18111 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Cdx1P18111 Gm43672-201ENSMUST00000199072 1731 ntBASIC14.63□□□□□ -0.07
Cdx1P18111 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Shroom3-211ENSMUST00000225438 5742 ntBASIC14.63□□□□□ -0.07
Cdx1P18111 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC14.63□□□□□ -0.07
Cdx1P18111 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Cdx1P18111 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.63□□□□□ -0.07
Cdx1P18111 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdx1P18111 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Fcho2-208ENSMUST00000224992 2964 ntBASIC14.62□□□□□ -0.07
Cdx1P18111 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC14.62□□□□□ -0.07
Cdx1P18111 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
Cdx1P18111 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC14.62□□□□□ -0.07
Cdx1P18111 Spcs1-204ENSMUST00000226782 949 ntBASIC14.62□□□□□ -0.07
Cdx1P18111 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC14.62□□□□□ -0.07
Cdx1P18111 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Cdx1P18111 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Cdx1P18111 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdx1P18111 Gm43294-201ENSMUST00000202850 2490 ntBASIC14.61□□□□□ -0.07
Cdx1P18111 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx1P18111 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx1P18111 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx1P18111 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Cdx1P18111 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx1P18111 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Cdx1P18111 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx1P18111 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx1P18111 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC14.61□□□□□ -0.07
Cdx1P18111 Gm26833-201ENSMUST00000180899 440 ntBASIC14.61□□□□□ -0.07
Cdx1P18111 Cdc34b-202ENSMUST00000188741 1252 ntBASIC14.61□□□□□ -0.07
Cdx1P18111 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx1P18111 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Cdx1P18111 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx1P18111 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Cdx1P18111 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdx1P18111 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Cdx1P18111 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Cdx1P18111 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Gm12251-201ENSMUST00000117893 792 ntBASIC14.6□□□□□ -0.07
Cdx1P18111 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC14.6□□□□□ -0.07
Cdx1P18111 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Gm6085-201ENSMUST00000182774 1470 ntBASIC14.6□□□□□ -0.07
Cdx1P18111 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdx1P18111 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms