Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf3Q9QXK7 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Cpsf3Q9QXK7 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf3Q9QXK7 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf3Q9QXK7 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.67■□□□□ 0.74
Cpsf3Q9QXK7 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf3Q9QXK7 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf3Q9QXK7 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf3Q9QXK7 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cpsf3Q9QXK7 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Gm27275-201ENSMUST00000184318 272 ntBASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Cpsf3Q9QXK7 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 AC112142.1-201ENSMUST00000228796 918 ntBASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cpsf3Q9QXK7 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Cpsf3Q9QXK7 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
Cpsf3Q9QXK7 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 Gm20760-201ENSMUST00000179197 648 ntBASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
Cpsf3Q9QXK7 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Gm9194-201ENSMUST00000220749 1447 ntBASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Trmt13-210ENSMUST00000198454 880 ntBASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cpsf3Q9QXK7 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.62■□□□□ 0.73
Cpsf3Q9QXK7 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cpsf3Q9QXK7 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cpsf3Q9QXK7 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cpsf3Q9QXK7 Gm11249-201ENSMUST00000117071 859 ntBASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms