Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cdc40Q9DC48 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
Cdc40Q9DC48 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Cdc40Q9DC48 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Cdc40Q9DC48 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cdc40Q9DC48 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cdc40Q9DC48 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Rncr4-201ENSMUST00000194541 2234 ntBASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Gm20760-201ENSMUST00000179197 648 ntBASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdc40Q9DC48 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdc40Q9DC48 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Cdc40Q9DC48 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Gm12527-201ENSMUST00000117967 564 ntBASIC16.9■□□□□ 0.3
Cdc40Q9DC48 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Gm9885-202ENSMUST00000186234 2209 ntBASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdc40Q9DC48 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Cdc40Q9DC48 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Gm22240-201ENSMUST00000175225 82 ntBASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 AC131586.2-201ENSMUST00000228370 1512 ntBASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdc40Q9DC48 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Cdc40Q9DC48 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cdc40Q9DC48 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cdc40Q9DC48 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cdc40Q9DC48 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC16.88■□□□□ 0.29
Cdc40Q9DC48 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC16.88■□□□□ 0.29
Cdc40Q9DC48 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC16.88■□□□□ 0.29
Cdc40Q9DC48 Gm19094-201ENSMUST00000209791 1246 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms