Protein–RNA interactions for Protein: Q8VDP2

UPF0428 protein CXorf56 homolog, mousemouse

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q8VDP2 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Q8VDP2 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Q8VDP2 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Q8VDP2 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.79■□□□□ 0.44
Q8VDP2 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Q8VDP2 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Q8VDP2 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Q8VDP2 Gm13238-201ENSMUST00000117655 780 ntBASIC17.79■□□□□ 0.44
Q8VDP2 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Q8VDP2 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC17.79■□□□□ 0.44
Q8VDP2 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Q8VDP2 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Q8VDP2 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Q8VDP2 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC17.79■□□□□ 0.44
Q8VDP2 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Q8VDP2 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Q8VDP2 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Q8VDP2 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Q8VDP2 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
Q8VDP2 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Q8VDP2 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Q8VDP2 Rps24-207ENSMUST00000224568 714 ntBASIC17.78■□□□□ 0.44
Q8VDP2 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Q8VDP2 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC17.78■□□□□ 0.44
Q8VDP2 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Q8VDP2 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Q8VDP2 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Q8VDP2 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Q8VDP2 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Q8VDP2 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Q8VDP2 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC17.77■□□□□ 0.44
Q8VDP2 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC17.77■□□□□ 0.44
Q8VDP2 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Q8VDP2 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Q8VDP2 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Q8VDP2 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Q8VDP2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Q8VDP2 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Q8VDP2 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Q8VDP2 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Q8VDP2 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Q8VDP2 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.76■□□□□ 0.43
Q8VDP2 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC17.76■□□□□ 0.43
Q8VDP2 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Q8VDP2 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Q8VDP2 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 Gm42501-201ENSMUST00000200220 1026 ntBASIC17.76■□□□□ 0.43
Q8VDP2 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC17.76■□□□□ 0.43
Q8VDP2 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.76■□□□□ 0.43
Q8VDP2 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Q8VDP2 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Q8VDP2 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Q8VDP2 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Q8VDP2 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC17.75■□□□□ 0.43
Q8VDP2 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Q8VDP2 AC093043.1-201ENSMUST00000226700 898 ntBASIC17.75■□□□□ 0.43
Q8VDP2 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Q8VDP2 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Q8VDP2 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC17.74■□□□□ 0.43
Q8VDP2 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Q8VDP2 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Q8VDP2 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms