Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Gm6627-201ENSMUST00000218299 2386 ntBASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps53Q8CCB4 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps53Q8CCB4 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Vps53Q8CCB4 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps53Q8CCB4 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Vps53Q8CCB4 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC21.24■□□□□ 0.99
Vps53Q8CCB4 AC135637.1-201ENSMUST00000227750 365 ntBASIC21.24■□□□□ 0.99
Vps53Q8CCB4 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps53Q8CCB4 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps53Q8CCB4 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps53Q8CCB4 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps53Q8CCB4 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Vps53Q8CCB4 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps53Q8CCB4 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.99
Vps53Q8CCB4 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Vps53Q8CCB4 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Vps53Q8CCB4 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC21.19■□□□□ 0.98
Vps53Q8CCB4 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Vps53Q8CCB4 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Vps53Q8CCB4 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Vps53Q8CCB4 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Vps53Q8CCB4 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Vps53Q8CCB4 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Gm37856-201ENSMUST00000191634 999 ntBASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Gm10812-201ENSMUST00000099864 546 ntBASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Vps53Q8CCB4 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Vps53Q8CCB4 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms