Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.24■□□□□ 0.83
Ift88Q61371 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.24■□□□□ 0.83
Ift88Q61371 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.24■□□□□ 0.83
Ift88Q61371 AC107452.1-201ENSMUST00000227963 481 ntBASIC20.24■□□□□ 0.83
Ift88Q61371 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ift88Q61371 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ift88Q61371 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ift88Q61371 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ift88Q61371 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Ift88Q61371 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ift88Q61371 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ift88Q61371 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ift88Q61371 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.23■□□□□ 0.83
Ift88Q61371 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ift88Q61371 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Ift88Q61371 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.23■□□□□ 0.83
Ift88Q61371 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ift88Q61371 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.22■□□□□ 0.83
Ift88Q61371 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Ift88Q61371 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ift88Q61371 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.21■□□□□ 0.83
Ift88Q61371 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ift88Q61371 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ift88Q61371 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ift88Q61371 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.21■□□□□ 0.83
Ift88Q61371 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ift88Q61371 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ift88Q61371 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.21■□□□□ 0.83
Ift88Q61371 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
Ift88Q61371 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
Ift88Q61371 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ift88Q61371 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ift88Q61371 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Ift88Q61371 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ift88Q61371 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ift88Q61371 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ift88Q61371 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.2■□□□□ 0.82
Ift88Q61371 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ift88Q61371 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Ift88Q61371 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ift88Q61371 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ift88Q61371 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC20.19■□□□□ 0.82
Ift88Q61371 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ift88Q61371 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ift88Q61371 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ift88Q61371 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Ift88Q61371 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ift88Q61371 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ift88Q61371 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ift88Q61371 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
Ift88Q61371 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ift88Q61371 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ift88Q61371 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ift88Q61371 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Ift88Q61371 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.18■□□□□ 0.82
Ift88Q61371 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ift88Q61371 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ift88Q61371 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ift88Q61371 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Gm13146-201ENSMUST00000118508 780 ntBASIC20.17■□□□□ 0.82
Ift88Q61371 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Ift88Q61371 Gm9988-201ENSMUST00000069786 435 ntBASIC20.17■□□□□ 0.82
Ift88Q61371 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
Ift88Q61371 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
Ift88Q61371 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Ift88Q61371 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ift88Q61371 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ift88Q61371 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ift88Q61371 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms