Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Gm22325-201ENSMUST00000158904 308 ntBASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Gm5408-201ENSMUST00000197998 747 ntBASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Upf3bQ3ULL6 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3bQ3ULL6 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Upf3bQ3ULL6 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.52■□□□□ 0.72
Upf3bQ3ULL6 Gm26524-201ENSMUST00000192339 390 ntBASIC19.52■□□□□ 0.72
Upf3bQ3ULL6 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Upf3bQ3ULL6 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.52■□□□□ 0.72
Upf3bQ3ULL6 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3bQ3ULL6 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Upf3bQ3ULL6 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Upf3bQ3ULL6 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Upf3bQ3ULL6 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Upf3bQ3ULL6 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Upf3bQ3ULL6 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 Rab3c-203ENSMUST00000224180 967 ntBASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 Gm9194-201ENSMUST00000220749 1447 ntBASIC19.5■□□□□ 0.71
Upf3bQ3ULL6 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3bQ3ULL6 Gm29257-201ENSMUST00000186115 639 ntBASIC19.49■□□□□ 0.71
Upf3bQ3ULL6 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3bQ3ULL6 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3bQ3ULL6 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3bQ3ULL6 Gm43859-201ENSMUST00000200075 1412 ntBASIC19.49■□□□□ 0.71
Upf3bQ3ULL6 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3bQ3ULL6 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Upf3bQ3ULL6 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Upf3bQ3ULL6 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Upf3bQ3ULL6 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Upf3bQ3ULL6 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.45■□□□□ 0.7
Upf3bQ3ULL6 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3bQ3ULL6 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Upf3bQ3ULL6 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC19.45■□□□□ 0.7
Upf3bQ3ULL6 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Upf3bQ3ULL6 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3bQ3ULL6 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3bQ3ULL6 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Upf3bQ3ULL6 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms