Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb1P63158 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb1P63158 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.07■□□□□ 0.8
Hmgb1P63158 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb1P63158 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Hmgb1P63158 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb1P63158 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb1P63158 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb1P63158 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb1P63158 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.06■□□□□ 0.8
Hmgb1P63158 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.06■□□□□ 0.8
Hmgb1P63158 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb1P63158 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb1P63158 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb1P63158 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.06■□□□□ 0.8
Hmgb1P63158 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Hmgb1P63158 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Hmgb1P63158 AC122335.2-201ENSMUST00000213901 6181 ntBASIC20.06■□□□□ 0.8
Hmgb1P63158 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb1P63158 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb1P63158 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.05■□□□□ 0.8
Hmgb1P63158 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb1P63158 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb1P63158 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
Hmgb1P63158 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.05■□□□□ 0.8
Hmgb1P63158 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb1P63158 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb1P63158 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.05■□□□□ 0.8
Hmgb1P63158 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb1P63158 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Hmgb1P63158 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Hmgb1P63158 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Hmgb1P63158 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Hmgb1P63158 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Hmgb1P63158 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Hmgb1P63158 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Hmgb1P63158 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.04■□□□□ 0.8
Hmgb1P63158 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Hmgb1P63158 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Hmgb1P63158 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.04■□□□□ 0.8
Hmgb1P63158 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Hmgb1P63158 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Hmgb1P63158 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Hmgb1P63158 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Hmgb1P63158 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Hmgb1P63158 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb1P63158 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb1P63158 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.03■□□□□ 0.8
Hmgb1P63158 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb1P63158 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb1P63158 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb1P63158 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.03■□□□□ 0.8
Hmgb1P63158 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.03■□□□□ 0.8
Hmgb1P63158 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC20.03■□□□□ 0.8
Hmgb1P63158 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb1P63158 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.03■□□□□ 0.8
Hmgb1P63158 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Hmgb1P63158 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb1P63158 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb1P63158 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Hmgb1P63158 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.8
Hmgb1P63158 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.02■□□□□ 0.8
Hmgb1P63158 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
Hmgb1P63158 Rarb-207ENSMUST00000225921 2756 ntBASIC20.02■□□□□ 0.8
Hmgb1P63158 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Hmgb1P63158 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Hmgb1P63158 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb1P63158 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb1P63158 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb1P63158 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb1P63158 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb1P63158 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.01■□□□□ 0.79
Hmgb1P63158 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.01■□□□□ 0.79
Hmgb1P63158 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.01■□□□□ 0.79
Hmgb1P63158 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.01■□□□□ 0.79
Hmgb1P63158 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb1P63158 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Hmgb1P63158 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb1P63158 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC20■□□□□ 0.79
Hmgb1P63158 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb1P63158 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb1P63158 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb1P63158 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20■□□□□ 0.79
Hmgb1P63158 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Hmgb1P63158 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20■□□□□ 0.79
Hmgb1P63158 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20■□□□□ 0.79
Hmgb1P63158 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Hmgb1P63158 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC20■□□□□ 0.79
Hmgb1P63158 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20■□□□□ 0.79
Hmgb1P63158 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms