Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sox3P53784 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.42■□□□□ 0.38
Sox3P53784 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sox3P53784 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
Sox3P53784 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC17.41■□□□□ 0.38
Sox3P53784 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Sox3P53784 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Sox3P53784 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Sox3P53784 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Sox3P53784 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.41■□□□□ 0.38
Sox3P53784 AC153881.1-201ENSMUST00000214448 284 ntBASIC17.41■□□□□ 0.38
Sox3P53784 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Sox3P53784 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Sox3P53784 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.41■□□□□ 0.38
Sox3P53784 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox3P53784 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Sox3P53784 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC17.41■□□□□ 0.38
Sox3P53784 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.4■□□□□ 0.38
Sox3P53784 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Sox3P53784 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Sox3P53784 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.4■□□□□ 0.38
Sox3P53784 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.4■□□□□ 0.38
Sox3P53784 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
Sox3P53784 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Sox3P53784 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox3P53784 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Sox3P53784 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Sox3P53784 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Sox3P53784 Grk6-206ENSMUST00000224995 2971 ntBASIC17.39■□□□□ 0.37
Sox3P53784 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox3P53784 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
Sox3P53784 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.39■□□□□ 0.37
Sox3P53784 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox3P53784 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox3P53784 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox3P53784 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Sox3P53784 BC021767-201ENSMUST00000126387 1716 ntBASIC17.38■□□□□ 0.37
Sox3P53784 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.38■□□□□ 0.37
Sox3P53784 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox3P53784 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Sox3P53784 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox3P53784 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
Sox3P53784 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox3P53784 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox3P53784 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.38■□□□□ 0.37
Sox3P53784 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.38■□□□□ 0.37
Sox3P53784 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.38■□□□□ 0.37
Sox3P53784 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.38■□□□□ 0.37
Sox3P53784 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.38■□□□□ 0.37
Sox3P53784 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox3P53784 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox3P53784 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox3P53784 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox3P53784 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.38■□□□□ 0.37
Sox3P53784 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Sox3P53784 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.37■□□□□ 0.37
Sox3P53784 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.37■□□□□ 0.37
Sox3P53784 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.37■□□□□ 0.37
Sox3P53784 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Sox3P53784 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.37■□□□□ 0.37
Sox3P53784 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox3P53784 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox3P53784 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms