Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
Rfx1P48377 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Rfx1P48377 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Rfx1P48377 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Rfx1P48377 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
Rfx1P48377 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Rfx1P48377 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Rfx1P48377 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Rfx1P48377 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Gm10167-201ENSMUST00000150411 1479 ntBASIC21.8■■□□□ 1.08
Rfx1P48377 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Gm43173-201ENSMUST00000202246 593 ntBASIC21.8■■□□□ 1.08
Rfx1P48377 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.8■■□□□ 1.08
Rfx1P48377 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Rfx1P48377 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rfx1P48377 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Rfx1P48377 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
Rfx1P48377 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC21.79■■□□□ 1.08
Rfx1P48377 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.79■■□□□ 1.08
Rfx1P48377 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC21.79■■□□□ 1.08
Rfx1P48377 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rfx1P48377 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
Rfx1P48377 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Rfx1P48377 Gm27032-201ENSMUST00000183124 1116 ntBASIC21.78■■□□□ 1.08
Rfx1P48377 Gm38205-201ENSMUST00000192243 258 ntBASIC21.78■■□□□ 1.08
Rfx1P48377 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.78■■□□□ 1.08
Rfx1P48377 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC21.78■■□□□ 1.08
Rfx1P48377 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Rfx1P48377 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rfx1P48377 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC21.77■■□□□ 1.08
Rfx1P48377 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx1P48377 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rfx1P48377 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rfx1P48377 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rfx1P48377 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Rfx1P48377 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Rfx1P48377 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Rfx1P48377 Gm8493-201ENSMUST00000196881 489 ntBASIC21.76■■□□□ 1.07
Rfx1P48377 Gm37194-201ENSMUST00000193092 3031 ntBASIC21.76■■□□□ 1.07
Rfx1P48377 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rfx1P48377 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC21.75■■□□□ 1.07
Rfx1P48377 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.75■■□□□ 1.07
Rfx1P48377 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Rfx1P48377 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
Rfx1P48377 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx1P48377 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.74■■□□□ 1.07
Rfx1P48377 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms