Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Gm14117-201ENSMUST00000122417 843 ntBASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Trav11A0A0B4J1J9 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Gm5576-201ENSMUST00000075809 1236 ntBASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Fst-202ENSMUST00000223640 2612 ntBASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Trav11A0A0B4J1J9 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Gm43702-201ENSMUST00000198772 2546 ntBASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Trav11A0A0B4J1J9 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Trav11A0A0B4J1J9 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Trav11A0A0B4J1J9 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Trav11A0A0B4J1J9 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Trav11A0A0B4J1J9 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trav11A0A0B4J1J9 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Trav11A0A0B4J1J9 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Trav11A0A0B4J1J9 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms