Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Dpy19l1-201ENSMUST00000115277 4747 ntTSL 2 BASIC8.11□□□□□ -1.11
Traf1P39428 Nos2-201ENSMUST00000018610 4192 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 Gm14531-201ENSMUST00000120845 285 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Gm22728-201ENSMUST00000158087 129 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Esd-209ENSMUST00000177181 835 ntTSL 5 BASIC8.11□□□□□ -1.11
Traf1P39428 Gm8609-201ENSMUST00000182967 998 ntBASIC8.11□□□□□ -1.11
Traf1P39428 1110008L16Rik-206ENSMUST00000184980 888 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
Traf1P39428 1700041M19Rik-202ENSMUST00000190908 1123 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 4930568G15Rik-202ENSMUST00000195635 996 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 4930572K03Rik-201ENSMUST00000196713 931 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 5033423K11Rik-202ENSMUST00000202802 1162 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Gm44896-201ENSMUST00000206190 772 ntBASIC8.11□□□□□ -1.11
Traf1P39428 5033421B08Rik-202ENSMUST00000219595 1194 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 AC122486.1-201ENSMUST00000221562 196 ntTSL 2 BASIC8.11□□□□□ -1.11
Traf1P39428 CT009527.2-201ENSMUST00000225386 606 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Vmn1r41-202ENSMUST00000226337 888 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Vmn1r41-203ENSMUST00000226562 1046 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Klre1-201ENSMUST00000053708 1294 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 Gm24036-201ENSMUST00000082868 156 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Mir296-201ENSMUST00000083587 79 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Gm16020-201ENSMUST00000084281 210 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Olfr266-203ENSMUST00000216610 1520 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
Traf1P39428 Atp13a4-208ENSMUST00000182627 4238 ntAPPRIS P3 TSL 5 BASIC8.11□□□□□ -1.11
Traf1P39428 Fbxw21-203ENSMUST00000198076 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 Gm9874-202ENSMUST00000194957 1464 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Trim5-201ENSMUST00000051795 1467 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
Traf1P39428 Gm37169-201ENSMUST00000195599 4161 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Sap30bp-203ENSMUST00000140991 3654 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 Plcb1-201ENSMUST00000070724 3853 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 AC164567.3-201ENSMUST00000217743 2869 ntBASIC8.11□□□□□ -1.11
Traf1P39428 Spire1-201ENSMUST00000045105 5033 ntAPPRIS P2 TSL 5 BASIC8.11□□□□□ -1.11
Traf1P39428 Gm38416-201ENSMUST00000209648 3565 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 Gm42864-201ENSMUST00000198371 1436 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Traf1P39428 Spag9-203ENSMUST00000075695 6910 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Gucy1b3-201ENSMUST00000029635 3223 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Gm42611-201ENSMUST00000199446 3407 ntBASIC8.1□□□□□ -1.11
Traf1P39428 Tmem87a-203ENSMUST00000110729 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Alpk1-206ENSMUST00000198955 4498 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Clasp1-210ENSMUST00000188710 10265 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Kmo-201ENSMUST00000040250 2695 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Zfp874a-201ENSMUST00000057241 2210 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Ikzf5-201ENSMUST00000046306 4430 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Zfp638-203ENSMUST00000113836 4366 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Mug-ps1-202ENSMUST00000189975 3293 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Pecam1-207ENSMUST00000183610 3006 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Vmn1r57-204ENSMUST00000228062 2365 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
Traf1P39428 Gm5546-201ENSMUST00000056145 2777 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Asxl2-201ENSMUST00000092003 11934 ntTSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Gm25877-201ENSMUST00000104326 129 ntBASIC8.1□□□□□ -1.11
Traf1P39428 Fabp12-203ENSMUST00000119761 548 ntAPPRIS P1 TSL 3 BASIC8.1□□□□□ -1.11
Traf1P39428 Gm11364-201ENSMUST00000137593 297 ntTSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Gm7867-201ENSMUST00000189856 546 ntBASIC8.1□□□□□ -1.11
Traf1P39428 Gm38256-201ENSMUST00000192097 950 ntTSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Gm38030-201ENSMUST00000192376 475 ntBASIC8.1□□□□□ -1.11
Traf1P39428 Gm37322-201ENSMUST00000193409 337 ntBASIC8.1□□□□□ -1.11
Traf1P39428 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 4930434F21Rik-201ENSMUST00000214381 742 ntTSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 AC153847.1-201ENSMUST00000214524 353 ntBASIC8.1□□□□□ -1.11
Traf1P39428 Aldoa-ps4-201ENSMUST00000216332 753 ntBASIC8.1□□□□□ -1.11
Traf1P39428 AC164436.1-201ENSMUST00000227074 772 ntBASIC8.1□□□□□ -1.11
Traf1P39428 Slxl1-201ENSMUST00000088740 730 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 A830010M20Rik-204ENSMUST00000112671 6756 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Atrx-201ENSMUST00000101305 2903 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Ermap-206ENSMUST00000138395 4551 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Lef1-203ENSMUST00000098611 2298 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Olfr435-202ENSMUST00000215565 2491 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Hspg2-201ENSMUST00000030547 14187 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Trdc-201ENSMUST00000196323 3865 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
Traf1P39428 Tm9sf4-201ENSMUST00000089027 3896 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Rasgrf1-202ENSMUST00000034912 4092 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 B830042I05Rik-201ENSMUST00000208333 1620 ntTSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Trim43c-202ENSMUST00000186363 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Arhgap6-203ENSMUST00000112127 3973 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Gm26544-201ENSMUST00000181404 2763 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Gm18313-201ENSMUST00000221036 1784 ntBASIC8.1□□□□□ -1.11
Traf1P39428 Slc17a3-204ENSMUST00000166467 4336 ntAPPRIS P3 TSL 5 BASIC8.1□□□□□ -1.11
Traf1P39428 Eci2-203ENSMUST00000110251 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Traf1P39428 Gm11853-201ENSMUST00000119687 1384 ntBASIC8.1□□□□□ -1.11
Traf1P39428 Ptpra-202ENSMUST00000077303 3066 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Traf1P39428 Fktn-203ENSMUST00000128667 6080 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Traf1P39428 Gm6327-201ENSMUST00000171185 1335 ntBASIC8.09□□□□□ -1.11
Traf1P39428 Cx3cr1-203ENSMUST00000215016 4493 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
Traf1P39428 Pomp-202ENSMUST00000201120 3850 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Traf1P39428 Vwa3a-204ENSMUST00000166668 4409 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Traf1P39428 Pus3-202ENSMUST00000121246 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
Traf1P39428 Olfr1106-202ENSMUST00000213781 2569 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
Traf1P39428 Olfr1106-203ENSMUST00000217650 2573 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
Traf1P39428 Etv1-201ENSMUST00000095767 6576 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Traf1P39428 Ighv1-19-201ENSMUST00000103505 348 ntAPPRIS ALT2 BASIC8.09□□□□□ -1.11
Traf1P39428 Gm12920-201ENSMUST00000121818 1186 ntBASIC8.09□□□□□ -1.11
Traf1P39428 Gm35202-201ENSMUST00000130083 712 ntTSL 2 BASIC8.09□□□□□ -1.11
Traf1P39428 Nudt7-205ENSMUST00000147605 966 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Traf1P39428 Gm21970-201ENSMUST00000160764 884 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
Traf1P39428 Gml-202ENSMUST00000164026 895 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
Traf1P39428 Mpped2-201ENSMUST00000016530 1217 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
Traf1P39428 Gm9285-201ENSMUST00000177691 697 ntBASIC8.09□□□□□ -1.11
Traf1P39428 Gm4373-201ENSMUST00000178571 556 ntBASIC8.09□□□□□ -1.11
Traf1P39428 Gm28958-201ENSMUST00000185864 703 ntBASIC8.09□□□□□ -1.11
Traf1P39428 1700016G22Rik-202ENSMUST00000186843 594 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
Traf1P39428 Gm28817-201ENSMUST00000187598 830 ntTSL 5 BASIC8.09□□□□□ -1.11
Retrieved 100 of 76,532 protein–RNA pairs in 68.8 ms