Protein–RNA interactions for Protein: Q8CIK8

Rfwd3, E3 ubiquitin-protein ligase RFWD3, mousemouse

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfwd3Q8CIK8 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Rfwd3Q8CIK8 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rfwd3Q8CIK8 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Rfwd3Q8CIK8 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Rfwd3Q8CIK8 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Rfwd3Q8CIK8 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rfwd3Q8CIK8 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Gm5784-201ENSMUST00000179344 2478 ntBASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Rfwd3Q8CIK8 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Mir5133-201ENSMUST00000174955 77 ntBASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Rfwd3Q8CIK8 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfwd3Q8CIK8 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfwd3Q8CIK8 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfwd3Q8CIK8 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Rfwd3Q8CIK8 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.17■□□□□ 0.34
Rfwd3Q8CIK8 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Rfwd3Q8CIK8 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Rfwd3Q8CIK8 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Rfwd3Q8CIK8 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Rfwd3Q8CIK8 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms