Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Hmgb3O54879 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15.25■□□□□ 0.03
Hmgb3O54879 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC15.24■□□□□ 0.03
Hmgb3O54879 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Hmgb3O54879 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Hmgb3O54879 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Hmgb3O54879 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Hmgb3O54879 Cap2-205ENSMUST00000225824 1634 ntBASIC15.24■□□□□ 0.03
Hmgb3O54879 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Hmgb3O54879 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb3O54879 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Hmgb3O54879 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb3O54879 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb3O54879 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Hmgb3O54879 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb3O54879 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Hmgb3O54879 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb3O54879 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.23■□□□□ 0.03
Hmgb3O54879 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb3O54879 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb3O54879 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb3O54879 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC15.23■□□□□ 0.03
Hmgb3O54879 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
Hmgb3O54879 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb3O54879 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Gm10571-201ENSMUST00000097869 1638 ntBASIC15.22■□□□□ 0.03
Hmgb3O54879 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb3O54879 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb3O54879 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC15.22■□□□□ 0.03
Hmgb3O54879 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb3O54879 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC15.22■□□□□ 0.03
Hmgb3O54879 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb3O54879 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb3O54879 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Hmgb3O54879 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb3O54879 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb3O54879 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Hmgb3O54879 AC123834.2-201ENSMUST00000224038 2340 ntBASIC15.21■□□□□ 0.03
Hmgb3O54879 Gm15853-202ENSMUST00000195518 2041 ntBASIC15.21■□□□□ 0.03
Hmgb3O54879 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb3O54879 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb3O54879 Gm27045-201ENSMUST00000182145 1402 ntBASIC15.21■□□□□ 0.03
Hmgb3O54879 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb3O54879 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb3O54879 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb3O54879 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb3O54879 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Hmgb3O54879 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb3O54879 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb3O54879 Gm6085-201ENSMUST00000182774 1470 ntBASIC15.2■□□□□ 0.02
Hmgb3O54879 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb3O54879 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb3O54879 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb3O54879 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb3O54879 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
Hmgb3O54879 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb3O54879 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Hmgb3O54879 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC15.2■□□□□ 0.02
Hmgb3O54879 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.2■□□□□ 0.02
Hmgb3O54879 Gm42922-201ENSMUST00000195887 2078 ntBASIC15.2■□□□□ 0.02
Hmgb3O54879 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb3O54879 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC15.19■□□□□ 0.02
Hmgb3O54879 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC15.19■□□□□ 0.02
Hmgb3O54879 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Hmgb3O54879 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Hmgb3O54879 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb3O54879 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb3O54879 Gm43702-201ENSMUST00000198772 2546 ntBASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms