Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm15181-201ENSMUST00000120142 177 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Gm4992-201ENSMUST00000120256 768 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Gm12506-201ENSMUST00000123620 806 ntTSL 5 BASIC10.89□□□□□ -0.67
Cux1P53564 Gm16157-202ENSMUST00000135564 1082 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Gm16006-201ENSMUST00000160938 566 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Gm5456-201ENSMUST00000170706 844 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Kcnj13-202ENSMUST00000174179 261 ntTSL 5 BASIC10.89□□□□□ -0.67
Cux1P53564 Obox3-ps1-201ENSMUST00000176885 995 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Gm17045-201ENSMUST00000178600 844 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Scgb2b33-201ENSMUST00000187413 334 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Fxyd4-204ENSMUST00000203433 670 ntTSL 3 BASIC10.89□□□□□ -0.67
Cux1P53564 Gm22684-201ENSMUST00000082849 132 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Olfr1312-201ENSMUST00000099600 954 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Cux1P53564 Olfr169-204ENSMUST00000216070 2328 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Cux1P53564 Olfr702-201ENSMUST00000080899 1348 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Cux1P53564 Kif6-207ENSMUST00000162854 3528 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Cux1P53564 Stxbp4-202ENSMUST00000107872 2529 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Chm-201ENSMUST00000026607 4868 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Dpcr1-201ENSMUST00000095467 2611 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Rubcnl-201ENSMUST00000036072 2651 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Fam168a-201ENSMUST00000049053 6609 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Gm13102-203ENSMUST00000105761 2281 ntAPPRIS P2 TSL 2 BASIC10.89□□□□□ -0.67
Cux1P53564 Gm13102-202ENSMUST00000097800 2293 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Cux1P53564 Bdnf-203ENSMUST00000111043 3839 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Zbed4-ps3-201ENSMUST00000187149 3244 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Mmp3-201ENSMUST00000034497 1801 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Cfap58-201ENSMUST00000066308 3345 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Ifit1bl2-201ENSMUST00000087357 3365 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Gm9112-201ENSMUST00000113610 420 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
Cux1P53564 Xlr-203ENSMUST00000114810 984 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps10-201ENSMUST00000117447 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps16-201ENSMUST00000118529 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Mgst1-204ENSMUST00000120302 559 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
Cux1P53564 Gm14974-201ENSMUST00000139112 804 ntTSL 3 BASIC10.89□□□□□ -0.67
Cux1P53564 Gm4904-201ENSMUST00000178243 1195 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps13-201ENSMUST00000178365 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps11-201ENSMUST00000178427 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps12-201ENSMUST00000179020 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps17-201ENSMUST00000179067 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps6-201ENSMUST00000179239 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps14-201ENSMUST00000179356 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps18-201ENSMUST00000179420 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps15-201ENSMUST00000179567 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12l1-201ENSMUST00000183090 399 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Gm6931-201ENSMUST00000183103 371 ntBASIC10.89□□□□□ -0.67
Cux1P53564 1700044C05Rik-201ENSMUST00000186060 898 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 4930403P22Rik-201ENSMUST00000192234 713 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Rps12-ps4-201ENSMUST00000208689 397 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Gm19324-201ENSMUST00000213229 1169 ntBASIC10.89□□□□□ -0.67
Cux1P53564 AC154806.5-204ENSMUST00000228900 867 ntBASIC10.89□□□□□ -0.67
Cux1P53564 Xlr-201ENSMUST00000067763 1032 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Cux1P53564 Ccdc68-202ENSMUST00000080050 1235 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Cux1P53564 4930590J08Rik-203ENSMUST00000205686 3395 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Pogz-204ENSMUST00000107269 5966 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Cux1P53564 Gm44194-201ENSMUST00000204222 3229 ntBASIC10.88□□□□□ -0.67
Cux1P53564 Gm45645-201ENSMUST00000211470 1963 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Lilra6-202ENSMUST00000090689 1977 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Vmn1r4-202ENSMUST00000176838 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Lrrtm4-205ENSMUST00000133918 2255 ntAPPRIS ALT1 TSL 5 BASIC10.88□□□□□ -0.67
Cux1P53564 AC123832.1-201ENSMUST00000214120 2371 ntBASIC10.88□□□□□ -0.67
Cux1P53564 Lama5-201ENSMUST00000015791 11388 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Ccdc47-202ENSMUST00000106865 704 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Lage3-202ENSMUST00000114152 746 ntTSL 2 BASIC10.88□□□□□ -0.67
Cux1P53564 Prdx2-rs3-201ENSMUST00000117259 594 ntBASIC10.88□□□□□ -0.67
Cux1P53564 Gm5793-201ENSMUST00000119393 630 ntBASIC10.88□□□□□ -0.67
Cux1P53564 4930405D11Rik-203ENSMUST00000142521 645 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Gm16231-201ENSMUST00000160432 319 ntTSL 3 BASIC10.88□□□□□ -0.67
Cux1P53564 Gm37637-201ENSMUST00000195540 1256 ntBASIC10.88□□□□□ -0.67
Cux1P53564 Gm45485-201ENSMUST00000211229 357 ntBASIC10.88□□□□□ -0.67
Cux1P53564 Gm7769-201ENSMUST00000212900 933 ntBASIC10.88□□□□□ -0.67
Cux1P53564 1700040E09Rik-201ENSMUST00000222440 606 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Tmem253-204ENSMUST00000228408 415 ntAPPRIS ALT2 BASIC10.88□□□□□ -0.67
Cux1P53564 Olfr788-201ENSMUST00000056961 936 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Cux1P53564 Foxp2-209ENSMUST00000131414 1381 ntTSL 5 BASIC10.88□□□□□ -0.67
Cux1P53564 Rd3l-202ENSMUST00000185354 1541 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Mettl15-201ENSMUST00000081631 1894 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Obox3-206ENSMUST00000174443 1979 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
Cux1P53564 Scn4a-201ENSMUST00000021056 6598 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Cux1P53564 Gm6866-201ENSMUST00000188559 2549 ntBASIC10.88□□□□□ -0.67
Cux1P53564 Olfr381-204ENSMUST00000215358 2658 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Cux1P53564 Nyap2-204ENSMUST00000123720 3471 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Vmn1r193-203ENSMUST00000227562 6840 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Cux1P53564 Mroh2a-202ENSMUST00000113130 7491 ntAPPRIS P2 TSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Olfr157-201ENSMUST00000214281 6617 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Grem2-201ENSMUST00000055294 3745 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Rnf222-201ENSMUST00000065213 3463 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Mpv17l-203ENSMUST00000128757 3089 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 AC159193.3-201ENSMUST00000221902 2622 ntBASIC10.87□□□□□ -0.67
Cux1P53564 Gm28824-201ENSMUST00000187496 2167 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Gm28948-201ENSMUST00000188447 2167 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Gm29472-201ENSMUST00000188599 2167 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Gm28561-201ENSMUST00000189366 2167 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Gm28732-201ENSMUST00000189632 2167 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Gm38136-201ENSMUST00000194775 2167 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Gm38296-201ENSMUST00000195205 2167 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Cops2-202ENSMUST00000110462 1853 ntTSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Arhgap19-202ENSMUST00000163265 5058 ntTSL 5 BASIC10.87□□□□□ -0.67
Cux1P53564 Mapk1ip1l-202ENSMUST00000166743 4542 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Rrp12-201ENSMUST00000038677 4319 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Cux1P53564 Gm14418-201ENSMUST00000108955 1415 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms