Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 Gm20049-201ENSMUST00000219950 730 ntBASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Cpsf3Q9QXK7 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Cpsf3Q9QXK7 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Gm22325-201ENSMUST00000158904 308 ntBASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cpsf3Q9QXK7 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Cpsf3Q9QXK7 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Cpsf3Q9QXK7 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.78■□□□□ 0.76
Cpsf3Q9QXK7 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cpsf3Q9QXK7 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cpsf3Q9QXK7 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Cpsf3Q9QXK7 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Gm27011-201ENSMUST00000182352 972 ntBASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.77■□□□□ 0.76
Cpsf3Q9QXK7 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.77■□□□□ 0.75
Cpsf3Q9QXK7 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cpsf3Q9QXK7 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Cpsf3Q9QXK7 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms