Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim39Q9ESN2 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.14■□□□□ 0.33
Trim39Q9ESN2 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.14■□□□□ 0.33
Trim39Q9ESN2 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim39Q9ESN2 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim39Q9ESN2 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim39Q9ESN2 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim39Q9ESN2 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.12■□□□□ 0.33
Trim39Q9ESN2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.12■□□□□ 0.33
Trim39Q9ESN2 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim39Q9ESN2 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim39Q9ESN2 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim39Q9ESN2 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim39Q9ESN2 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim39Q9ESN2 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.08■□□□□ 0.33
Trim39Q9ESN2 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim39Q9ESN2 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim39Q9ESN2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim39Q9ESN2 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trim39Q9ESN2 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.08■□□□□ 0.33
Trim39Q9ESN2 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim39Q9ESN2 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.08■□□□□ 0.32
Trim39Q9ESN2 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms