Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ushbp1Q8R370 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ushbp1Q8R370 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ushbp1Q8R370 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ushbp1Q8R370 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Ushbp1Q8R370 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Ushbp1Q8R370 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ushbp1Q8R370 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ushbp1Q8R370 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Ushbp1Q8R370 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.61■□□□□ 0.89
Ushbp1Q8R370 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
Ushbp1Q8R370 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ushbp1Q8R370 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ushbp1Q8R370 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Gm7290-201ENSMUST00000104990 617 ntBASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Gm12918-201ENSMUST00000120234 636 ntBASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Gm15710-201ENSMUST00000121821 636 ntBASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Gm6420-201ENSMUST00000193885 723 ntBASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Gm5075-201ENSMUST00000196916 622 ntBASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.58■□□□□ 0.89
Ushbp1Q8R370 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.58■□□□□ 0.88
Ushbp1Q8R370 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ushbp1Q8R370 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ushbp1Q8R370 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Gm13168-201ENSMUST00000121771 632 ntBASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ushbp1Q8R370 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ushbp1Q8R370 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ushbp1Q8R370 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ushbp1Q8R370 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ushbp1Q8R370 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.56■□□□□ 0.88
Ushbp1Q8R370 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ushbp1Q8R370 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.56■□□□□ 0.88
Ushbp1Q8R370 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.56■□□□□ 0.88
Ushbp1Q8R370 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ushbp1Q8R370 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ushbp1Q8R370 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ushbp1Q8R370 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Gm20049-201ENSMUST00000219950 730 ntBASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ushbp1Q8R370 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms