Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig4Q8BTF7 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lig4Q8BTF7 Gm10653-202ENSMUST00000139570 835 ntBASIC19.47■□□□□ 0.71
Lig4Q8BTF7 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig4Q8BTF7 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig4Q8BTF7 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
Lig4Q8BTF7 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig4Q8BTF7 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig4Q8BTF7 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lig4Q8BTF7 BC021767-201ENSMUST00000126387 1716 ntBASIC19.46■□□□□ 0.71
Lig4Q8BTF7 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Gm2559-201ENSMUST00000201323 363 ntBASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lig4Q8BTF7 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.45■□□□□ 0.7
Lig4Q8BTF7 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lig4Q8BTF7 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Gm12896-201ENSMUST00000118430 226 ntBASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Gm22325-201ENSMUST00000158904 308 ntBASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Gm20760-201ENSMUST00000179197 648 ntBASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lig4Q8BTF7 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lig4Q8BTF7 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lig4Q8BTF7 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Gm37856-201ENSMUST00000191634 999 ntBASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.41■□□□□ 0.7
Lig4Q8BTF7 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lig4Q8BTF7 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms