Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ubp1Q811S7 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ubp1Q811S7 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ubp1Q811S7 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ubp1Q811S7 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ubp1Q811S7 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ubp1Q811S7 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ubp1Q811S7 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ubp1Q811S7 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Gm10602-201ENSMUST00000098239 609 ntBASIC18.11■□□□□ 0.49
Ubp1Q811S7 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ubp1Q811S7 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Ubp1Q811S7 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
Ubp1Q811S7 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ubp1Q811S7 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Gm7290-201ENSMUST00000104990 617 ntBASIC18.09■□□□□ 0.49
Ubp1Q811S7 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Gm12933-201ENSMUST00000120203 872 ntBASIC18.09■□□□□ 0.49
Ubp1Q811S7 Gm12918-201ENSMUST00000120234 636 ntBASIC18.09■□□□□ 0.49
Ubp1Q811S7 Gm15710-201ENSMUST00000121821 636 ntBASIC18.09■□□□□ 0.49
Ubp1Q811S7 Gm5075-201ENSMUST00000196916 622 ntBASIC18.09■□□□□ 0.49
Ubp1Q811S7 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC18.09■□□□□ 0.49
Ubp1Q811S7 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC18.09■□□□□ 0.49
Ubp1Q811S7 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ubp1Q811S7 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ubp1Q811S7 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ubp1Q811S7 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ubp1Q811S7 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ubp1Q811S7 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.08■□□□□ 0.49
Ubp1Q811S7 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Ubp1Q811S7 Gm6211-202ENSMUST00000167849 925 ntBASIC18.08■□□□□ 0.48
Ubp1Q811S7 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ubp1Q811S7 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ubp1Q811S7 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ubp1Q811S7 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.08■□□□□ 0.48
Ubp1Q811S7 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ubp1Q811S7 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ubp1Q811S7 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ubp1Q811S7 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Gm13148-201ENSMUST00000118892 745 ntBASIC18.07■□□□□ 0.48
Ubp1Q811S7 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Ubp1Q811S7 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ubp1Q811S7 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC18.07■□□□□ 0.48
Ubp1Q811S7 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms