Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Gm6211-202ENSMUST00000167849 925 ntBASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Upf3bQ3ULL6 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Upf3bQ3ULL6 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Gm10602-201ENSMUST00000098239 609 ntBASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Upf3bQ3ULL6 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Upf3bQ3ULL6 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Upf3bQ3ULL6 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Upf3bQ3ULL6 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Upf3bQ3ULL6 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Upf3bQ3ULL6 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Gm13148-201ENSMUST00000118892 745 ntBASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Upf3bQ3ULL6 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.63■□□□□ 0.73
Upf3bQ3ULL6 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Upf3bQ3ULL6 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3bQ3ULL6 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3bQ3ULL6 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3bQ3ULL6 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.63■□□□□ 0.73
Upf3bQ3ULL6 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Upf3bQ3ULL6 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3bQ3ULL6 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Upf3bQ3ULL6 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Upf3bQ3ULL6 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Upf3bQ3ULL6 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms