Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 AC153881.2-201ENSMUST00000214877 204 ntBASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Gm5417-201ENSMUST00000079706 384 ntBASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
Upf3aQ3ULJ3 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Golph3-202ENSMUST00000226517 2359 ntBASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Upf3aQ3ULJ3 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Upf3aQ3ULJ3 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Upf3aQ3ULJ3 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Gm15375-201ENSMUST00000119510 849 ntBASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Gm38285-201ENSMUST00000192928 922 ntBASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 AC121577.1-201ENSMUST00000227302 707 ntBASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Hsf1-207ENSMUST00000228371 2102 ntBASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Upf3aQ3ULJ3 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Gm18025-201ENSMUST00000221733 862 ntBASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Upf3aQ3ULJ3 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Gm43799-201ENSMUST00000201845 579 ntBASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Gm21814-202ENSMUST00000203277 873 ntBASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Upf3aQ3ULJ3 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Gm6433-201ENSMUST00000118634 875 ntBASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Upf3aQ3ULJ3 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.35■□□□□ 0.69
Upf3aQ3ULJ3 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Upf3aQ3ULJ3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Upf3aQ3ULJ3 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.35■□□□□ 0.69
Upf3aQ3ULJ3 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Upf3aQ3ULJ3 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Upf3aQ3ULJ3 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Upf3aQ3ULJ3 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Upf3aQ3ULJ3 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Upf3aQ3ULJ3 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Upf3aQ3ULJ3 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Upf3aQ3ULJ3 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms