Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC27.96■■■□□ 2.07
Ushbp1Q8R370 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC27.95■■■□□ 2.06
Ushbp1Q8R370 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
Ushbp1Q8R370 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
Ushbp1Q8R370 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Ushbp1Q8R370 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC27.93■■■□□ 2.06
Ushbp1Q8R370 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC27.92■■■□□ 2.06
Ushbp1Q8R370 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Ushbp1Q8R370 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC27.92■■■□□ 2.06
Ushbp1Q8R370 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Ushbp1Q8R370 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Ushbp1Q8R370 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Ushbp1Q8R370 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC27.89■■■□□ 2.06
Ushbp1Q8R370 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
Ushbp1Q8R370 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC27.89■■■□□ 2.06
Ushbp1Q8R370 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Ushbp1Q8R370 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC27.87■■■□□ 2.05
Ushbp1Q8R370 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Ushbp1Q8R370 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC27.83■■■□□ 2.05
Ushbp1Q8R370 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
Ushbp1Q8R370 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Ushbp1Q8R370 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
Ushbp1Q8R370 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Ushbp1Q8R370 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Ushbp1Q8R370 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
Ushbp1Q8R370 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Ushbp1Q8R370 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC27.77■■■□□ 2.04
Ushbp1Q8R370 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Ushbp1Q8R370 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Ushbp1Q8R370 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Ushbp1Q8R370 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Ushbp1Q8R370 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC27.72■■■□□ 2.03
Ushbp1Q8R370 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
Ushbp1Q8R370 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Ushbp1Q8R370 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC27.71■■■□□ 2.03
Ushbp1Q8R370 Gm5987-201ENSMUST00000196433 1151 ntBASIC27.71■■■□□ 2.03
Ushbp1Q8R370 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC27.71■■■□□ 2.03
Ushbp1Q8R370 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC27.71■■■□□ 2.03
Ushbp1Q8R370 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC27.7■■■□□ 2.03
Ushbp1Q8R370 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Ushbp1Q8R370 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC27.69■■■□□ 2.02
Ushbp1Q8R370 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
Ushbp1Q8R370 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Ushbp1Q8R370 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC27.68■■■□□ 2.02
Ushbp1Q8R370 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
Ushbp1Q8R370 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC27.67■■■□□ 2.02
Ushbp1Q8R370 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Ushbp1Q8R370 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC27.66■■■□□ 2.02
Ushbp1Q8R370 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Ushbp1Q8R370 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC27.64■■■□□ 2.02
Ushbp1Q8R370 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
Ushbp1Q8R370 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.01
Ushbp1Q8R370 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Ushbp1Q8R370 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC27.63■■■□□ 2.01
Ushbp1Q8R370 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Ushbp1Q8R370 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Ushbp1Q8R370 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC27.61■■■□□ 2.01
Ushbp1Q8R370 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC27.61■■■□□ 2.01
Ushbp1Q8R370 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Ushbp1Q8R370 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Ushbp1Q8R370 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
Ushbp1Q8R370 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Ushbp1Q8R370 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Ushbp1Q8R370 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC27.59■■■□□ 2.01
Ushbp1Q8R370 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC27.59■■■□□ 2.01
Ushbp1Q8R370 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
Ushbp1Q8R370 Gm24970-201ENSMUST00000175582 82 ntBASIC27.58■■■□□ 2.01
Ushbp1Q8R370 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC27.57■■■□□ 2
Ushbp1Q8R370 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC27.56■■■□□ 2
Ushbp1Q8R370 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
Ushbp1Q8R370 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC27.55■■■□□ 2
Ushbp1Q8R370 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Ushbp1Q8R370 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC27.53■■■□□ 2
Ushbp1Q8R370 Amer2-203ENSMUST00000225247 2662 ntBASIC27.52■■■□□ 2
Ushbp1Q8R370 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.99
Ushbp1Q8R370 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC27.51■■□□□ 1.99
Ushbp1Q8R370 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
Ushbp1Q8R370 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Ushbp1Q8R370 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC27.49■■□□□ 1.99
Ushbp1Q8R370 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Ushbp1Q8R370 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Ushbp1Q8R370 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC27.49■■□□□ 1.99
Ushbp1Q8R370 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Ushbp1Q8R370 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Ushbp1Q8R370 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
Ushbp1Q8R370 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Ushbp1Q8R370 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Ushbp1Q8R370 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
Ushbp1Q8R370 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC27.45■■□□□ 1.98
Ushbp1Q8R370 Gm9939-201ENSMUST00000067161 1154 ntBASIC27.45■■□□□ 1.98
Ushbp1Q8R370 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC27.45■■□□□ 1.98
Ushbp1Q8R370 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Ushbp1Q8R370 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Ushbp1Q8R370 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
Ushbp1Q8R370 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
Ushbp1Q8R370 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC27.43■■□□□ 1.98
Ushbp1Q8R370 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Ushbp1Q8R370 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Ushbp1Q8R370 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Ushbp1Q8R370 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Retrieved 100 of 76,532 protein–RNA pairs in 11.9 ms