Protein–RNA interactions for Protein: Q8K4Z5

Sf3a1, Splicing factor 3A subunit 1, mousemouse

Known RBP Predictions only

Length 791 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3a1Q8K4Z5 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Sf3a1Q8K4Z5 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Sf3a1Q8K4Z5 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC30.44■■■□□ 2.46
Sf3a1Q8K4Z5 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Sf3a1Q8K4Z5 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC30.43■■■□□ 2.46
Sf3a1Q8K4Z5 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC30.42■■■□□ 2.46
Sf3a1Q8K4Z5 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Sf3a1Q8K4Z5 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
Sf3a1Q8K4Z5 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Sf3a1Q8K4Z5 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Sf3a1Q8K4Z5 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC30.39■■■□□ 2.46
Sf3a1Q8K4Z5 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
Sf3a1Q8K4Z5 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Sf3a1Q8K4Z5 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Sf3a1Q8K4Z5 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Sf3a1Q8K4Z5 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Sf3a1Q8K4Z5 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
Sf3a1Q8K4Z5 Gm24970-201ENSMUST00000175582 82 ntBASIC30.36■■■□□ 2.45
Sf3a1Q8K4Z5 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC30.36■■■□□ 2.45
Sf3a1Q8K4Z5 Zxda-201ENSMUST00000117281 2621 ntBASIC30.35■■■□□ 2.45
Sf3a1Q8K4Z5 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Sf3a1Q8K4Z5 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Sf3a1Q8K4Z5 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
Sf3a1Q8K4Z5 Gm43863-201ENSMUST00000203822 1192 ntBASIC30.32■■■□□ 2.44
Sf3a1Q8K4Z5 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
Sf3a1Q8K4Z5 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Sf3a1Q8K4Z5 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
Sf3a1Q8K4Z5 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
Sf3a1Q8K4Z5 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Sf3a1Q8K4Z5 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC30.29■■■□□ 2.44
Sf3a1Q8K4Z5 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Sf3a1Q8K4Z5 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
Sf3a1Q8K4Z5 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC30.26■■■□□ 2.43
Sf3a1Q8K4Z5 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Sf3a1Q8K4Z5 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Sf3a1Q8K4Z5 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC30.23■■■□□ 2.43
Sf3a1Q8K4Z5 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC30.23■■■□□ 2.43
Sf3a1Q8K4Z5 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Sf3a1Q8K4Z5 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Sf3a1Q8K4Z5 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Sf3a1Q8K4Z5 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC30.21■■■□□ 2.43
Sf3a1Q8K4Z5 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Sf3a1Q8K4Z5 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
Sf3a1Q8K4Z5 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC30.2■■■□□ 2.43
Sf3a1Q8K4Z5 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC30.19■■■□□ 2.42
Sf3a1Q8K4Z5 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC30.19■■■□□ 2.42
Sf3a1Q8K4Z5 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
Sf3a1Q8K4Z5 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Sf3a1Q8K4Z5 AC157572.2-201ENSMUST00000226970 908 ntBASIC30.16■■■□□ 2.42
Sf3a1Q8K4Z5 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Sf3a1Q8K4Z5 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Sf3a1Q8K4Z5 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Sf3a1Q8K4Z5 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
Sf3a1Q8K4Z5 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Sf3a1Q8K4Z5 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC30.14■■■□□ 2.42
Sf3a1Q8K4Z5 Gm43445-201ENSMUST00000198564 2091 ntBASIC30.14■■■□□ 2.42
Sf3a1Q8K4Z5 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Sf3a1Q8K4Z5 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
Sf3a1Q8K4Z5 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Sf3a1Q8K4Z5 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC30.12■■■□□ 2.41
Sf3a1Q8K4Z5 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Sf3a1Q8K4Z5 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC30.08■■■□□ 2.41
Sf3a1Q8K4Z5 Gm6206-201ENSMUST00000133472 2199 ntBASIC30.08■■■□□ 2.41
Sf3a1Q8K4Z5 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Sf3a1Q8K4Z5 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC30.08■■■□□ 2.41
Sf3a1Q8K4Z5 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
Sf3a1Q8K4Z5 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Sf3a1Q8K4Z5 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30.06■■■□□ 2.4
Sf3a1Q8K4Z5 Gm9905-201ENSMUST00000065740 1845 ntBASIC30.06■■■□□ 2.4
Sf3a1Q8K4Z5 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
Sf3a1Q8K4Z5 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Sf3a1Q8K4Z5 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC30.05■■■□□ 2.4
Sf3a1Q8K4Z5 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC30.04■■■□□ 2.4
Sf3a1Q8K4Z5 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Sf3a1Q8K4Z5 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Sf3a1Q8K4Z5 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Sf3a1Q8K4Z5 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Sf3a1Q8K4Z5 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
Sf3a1Q8K4Z5 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.4
Sf3a1Q8K4Z5 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
Sf3a1Q8K4Z5 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Sf3a1Q8K4Z5 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC30■■■□□ 2.39
Sf3a1Q8K4Z5 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
Sf3a1Q8K4Z5 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
Sf3a1Q8K4Z5 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Sf3a1Q8K4Z5 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Sf3a1Q8K4Z5 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Sf3a1Q8K4Z5 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
Sf3a1Q8K4Z5 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
Sf3a1Q8K4Z5 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC29.94■■■□□ 2.38
Sf3a1Q8K4Z5 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Sf3a1Q8K4Z5 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC29.92■■■□□ 2.38
Sf3a1Q8K4Z5 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Sf3a1Q8K4Z5 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Sf3a1Q8K4Z5 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Sf3a1Q8K4Z5 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC29.92■■■□□ 2.38
Sf3a1Q8K4Z5 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC29.91■■■□□ 2.38
Sf3a1Q8K4Z5 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Sf3a1Q8K4Z5 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC29.88■■■□□ 2.37
Sf3a1Q8K4Z5 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms