Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Ccdc40Q8BI79 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Ccdc40Q8BI79 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Ccdc40Q8BI79 Gm9905-201ENSMUST00000065740 1845 ntBASIC25.49■■□□□ 1.67
Ccdc40Q8BI79 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
Ccdc40Q8BI79 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Ccdc40Q8BI79 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC25.48■■□□□ 1.67
Ccdc40Q8BI79 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ccdc40Q8BI79 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC25.47■■□□□ 1.67
Ccdc40Q8BI79 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ccdc40Q8BI79 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC25.46■■□□□ 1.67
Ccdc40Q8BI79 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Ccdc40Q8BI79 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Ccdc40Q8BI79 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Ccdc40Q8BI79 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Ccdc40Q8BI79 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Ccdc40Q8BI79 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ccdc40Q8BI79 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ccdc40Q8BI79 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ccdc40Q8BI79 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ccdc40Q8BI79 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
Ccdc40Q8BI79 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
Ccdc40Q8BI79 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Ccdc40Q8BI79 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC25.39■■□□□ 1.66
Ccdc40Q8BI79 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Ccdc40Q8BI79 Gm43445-201ENSMUST00000198564 2091 ntBASIC25.38■■□□□ 1.65
Ccdc40Q8BI79 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC25.38■■□□□ 1.65
Ccdc40Q8BI79 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
Ccdc40Q8BI79 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ccdc40Q8BI79 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Ccdc40Q8BI79 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
Ccdc40Q8BI79 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ccdc40Q8BI79 Gm6206-201ENSMUST00000133472 2199 ntBASIC25.36■■□□□ 1.65
Ccdc40Q8BI79 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ccdc40Q8BI79 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC25.36■■□□□ 1.65
Ccdc40Q8BI79 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
Ccdc40Q8BI79 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
Ccdc40Q8BI79 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Ccdc40Q8BI79 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Ccdc40Q8BI79 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Ccdc40Q8BI79 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Ccdc40Q8BI79 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
Ccdc40Q8BI79 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Ccdc40Q8BI79 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC25.3■■□□□ 1.64
Ccdc40Q8BI79 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Ccdc40Q8BI79 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Ccdc40Q8BI79 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ccdc40Q8BI79 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
Ccdc40Q8BI79 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ccdc40Q8BI79 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ccdc40Q8BI79 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Ccdc40Q8BI79 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Ccdc40Q8BI79 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ccdc40Q8BI79 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC25.25■■□□□ 1.63
Ccdc40Q8BI79 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc40Q8BI79 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc40Q8BI79 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc40Q8BI79 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc40Q8BI79 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc40Q8BI79 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc40Q8BI79 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC25.23■■□□□ 1.63
Ccdc40Q8BI79 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC25.23■■□□□ 1.63
Ccdc40Q8BI79 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc40Q8BI79 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc40Q8BI79 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc40Q8BI79 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC25.22■■□□□ 1.63
Ccdc40Q8BI79 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ccdc40Q8BI79 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Ccdc40Q8BI79 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ccdc40Q8BI79 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC25.2■■□□□ 1.62
Ccdc40Q8BI79 Zfp131-205ENSMUST00000223812 663 ntBASIC25.19■■□□□ 1.62
Ccdc40Q8BI79 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ccdc40Q8BI79 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ccdc40Q8BI79 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Ccdc40Q8BI79 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ccdc40Q8BI79 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
Ccdc40Q8BI79 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ccdc40Q8BI79 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC25.16■■□□□ 1.62
Ccdc40Q8BI79 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ccdc40Q8BI79 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC25.14■■□□□ 1.62
Ccdc40Q8BI79 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Ccdc40Q8BI79 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Ccdc40Q8BI79 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
Ccdc40Q8BI79 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
Ccdc40Q8BI79 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ccdc40Q8BI79 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Ccdc40Q8BI79 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Ccdc40Q8BI79 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Ccdc40Q8BI79 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
Ccdc40Q8BI79 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC25.1■■□□□ 1.61
Ccdc40Q8BI79 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ccdc40Q8BI79 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Ccdc40Q8BI79 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Ccdc40Q8BI79 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC25.08■■□□□ 1.61
Ccdc40Q8BI79 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Ccdc40Q8BI79 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC25.07■■□□□ 1.6
Ccdc40Q8BI79 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Ccdc40Q8BI79 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ccdc40Q8BI79 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC25.05■■□□□ 1.6
Ccdc40Q8BI79 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Retrieved 100 of 76,532 protein–RNA pairs in 87.5 ms